PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g022520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CO-like | ||||||||
Protein Properties | Length: 361aa MW: 38836.1 Da PI: 5.849 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.5 | 2.4e-07 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ + l+C+ + +lC +C ++ H Csa08g022520.1 4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36 58***************************9954 PP | |||||||
2 | zf-B_box | 27.9 | 4.8e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ Csa08g022520.1 46 VWICEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91 689*****************************66899999*99986 PP | |||||||
3 | CCT | 70 | 6.1e-24 | 293 | 336 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ Csa08g022520.1 293 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 336 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.7E-13 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.495 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.64E-9 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.836 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.1E-7 | 46 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.57E-9 | 47 | 91 | No hit | No description |
SMART | SM00336 | 1.3E-10 | 49 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.767 | 293 | 335 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.0E-18 | 293 | 335 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWICE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS DGSVKHTAVN FLDDCYFSDL 120 GGNGSREEEE EEAASWLLLP NPKTTTTTTT TTTVAAKEVP GDSPEMNTGQ QYLFSDPDPY 180 LDLDYGSVDP KVESLEQNSS GTDGVVPVEN HTVRVPTVNE NCFELDFTGG SKGFAYGGGY 240 NCISHSVSSS SMEVGVVPDG GSVADVSYPY GGSATSGADP GSQRAVPLTS AEREARVMRY 300 REKRKNRKFE KTIRYASRKA YAEMRPRIKG RFAKRTDTTE SNDAVAHGGI FSGFGLVPTF 360 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g022520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493757 | 0.0 | AB493757.1 Arabidopsis thaliana At5g24930 mRNA for hypothetical protein, partial cds, clone: RAAt5g24930. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421344.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 0.0 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A178UN26 | 0.0 | A0A178UN26_ARATH; COL4 | ||||
STRING | XP_010421344.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2760 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 0.0 | CONSTANS-like 4 |