PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa08g018810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26729.5 Da PI: 9.6832 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.6 | 1.6e-18 | 22 | 70 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++ s++++ ++ R ++++KKA+ELS+LCd+ev+vi++ +g+l ++++ Csa08g018810.1 22 LSSVSKKTTNLAMREQTMFKKASELSILCDVEVCVIYYNRDGELvRTWP 70 67889999**********************************9746887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.699 | 12 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.5E-10 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.69E-16 | 16 | 105 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.16E-21 | 20 | 97 | No hit | No description |
Pfam | PF00319 | 2.0E-13 | 26 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MLTKDKTTKL LSVRNRRCFK KLSSVSKKTT NLAMREQTMF KKASELSILC DVEVCVIYYN 60 RDGELVRTWP EDQSKVRDMA ERFSKLSDRE RRKKSTNLSQ FLNKKKTTLK YKKKTSFDIT 120 EDNKFSEKLL EMEASLESSL RVCQDQLLRV LQNQTKPPDQ NPPPVVSSAG FFTPDPSLMS 180 GTEQYLSTPS LTQQHQSKVS VFLYNHDNGS FCQLPDSSVS TFDPSTMLDY VF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa08g018810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010424267.2 | 1e-170 | PREDICTED: agamous-like MADS-box protein AGL53 | ||||
Swissprot | Q7X9N2 | 5e-68 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | R0H119 | 7e-86 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010424267.1 | 1e-170 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G27944.1 | 1e-60 | M-type_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|