PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g015570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 20692.3 Da PI: 9.1417 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.6 | 4.5e-27 | 8 | 83 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++w+fF++r++++a+g r++r+t sgyWkatg+ +v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ Csa08g015570.1 8 GDVEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 83 56789*********************************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.362 | 1 | 108 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-29 | 8 | 108 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-13 | 12 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSGERCRGDV EQWFFFVPRQ EREARGGRPS RTTGSGYWKA TGSPGPVFSK DNRMIGVKKT 60 MVFYTGKAPT GRKTKWKMNE YKAVEETVNA STAPQVRHEF SLCRVYVTTG SSRAFDRRPP 120 VGVLQPERML TNEVAVAGTS SFRAESSPET SISGGEQNVD LFMNVDLVEG LTEPIWEWEQ 180 LSWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-23 | 11 | 113 | 71 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-23 | 11 | 113 | 71 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-23 | 11 | 113 | 71 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-23 | 11 | 113 | 71 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-23 | 11 | 113 | 74 | 173 | NAC domain-containing protein 19 |
3swm_B | 9e-23 | 11 | 113 | 74 | 173 | NAC domain-containing protein 19 |
3swm_C | 9e-23 | 11 | 113 | 74 | 173 | NAC domain-containing protein 19 |
3swm_D | 9e-23 | 11 | 113 | 74 | 173 | NAC domain-containing protein 19 |
3swp_A | 9e-23 | 11 | 113 | 74 | 173 | NAC domain-containing protein 19 |
3swp_B | 9e-23 | 11 | 113 | 74 | 173 | NAC domain-containing protein 19 |
3swp_C | 9e-23 | 11 | 113 | 74 | 173 | NAC domain-containing protein 19 |
3swp_D | 9e-23 | 11 | 113 | 74 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-23 | 11 | 113 | 71 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-23 | 11 | 113 | 71 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g015570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421027.1 | 1e-134 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-105 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | R0FHF5 | 1e-109 | R0FHF5_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010421027.1 | 1e-133 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-96 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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