PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g011480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 781aa    MW: 89704 Da    PI: 7.6412
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g011480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.75.2e-2047121189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  Csa08g011480.1  47 EYYNGYAIRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 121
                     69**************************************876..............589***************************98 PP
2FAR167.73e-21218294191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l p
  Csa08g011480.1 218 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 294
                     6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1547121IPR004330FAR1 DNA binding domain
PfamPF031019.9E-17218294IPR004330FAR1 DNA binding domain
PfamPF105511.5E-24392483IPR018289MULE transposase domain
PROSITE profilePS5096610.361666702IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-7674699IPR007527Zinc finger, SWIM-type
SMARTSM005753.1E-8677704IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MVAKAYPVRV LHHNNNNNNG LSEDEEAGSG VEPYVGLEFD TAEEAREYYN GYAIRTGFKV  60
RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS RTGCTAFIRV QRRDTGKWVL DQIQKEHNHE  120
LGGETQVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES DREPRSCRGG GFKRFKGGGG  180
GEGEVSDDHH HQMQQSKAVT GTEPYAGLEF GSANEACQFY QAYAEVVGFR VRIGQLFRSK  240
VDGSITSRRF VCSREGFQHP SRMGCGAYMR IKRQDSGGWI VDRLNKDHNH DLEPGKKNDA  300
GMKKITDDGT GGLDSVDLIE LNDFGNNIKK TRENRIGKEW YPLLLDYFQS RQTEDMGFFY  360
AVELDVSNGS CMSIFWADSR ARFACSQFGD TVVFDTSYRK GNYAVPFATV IGFNHHRQPV  420
LLGCAMIADE SKEAFLWLFQ TWLRAMSGRR PRSIVADQDL PIQQALVQVF PGAHHRYSAW  480
QVREKEQENL RPFPSEFKYE YEKCIYQTQT TVEFDSVWSA LINKYGLRDD IWLREIYEQR  540
ENWVPAYLRA SFFAGIPING TIEPFFGASL DALTPLREFI SRYEQALEQR REEERKEDFN  600
SYNLQPFLQT KEPVEEQCRR LYTLTVFRIF QSELVQSYNY LCLKTYEEGA ISRFLVRKCG  660
NESEKHAVTF SASNLNSSCS CQMFEHEGLL CRHILKVFNL LDIRELPSRY ILHRWTKNAE  720
FGFVRDMESG VSAQDLKALM VWSLREAASK YIEFGTSSLE KYKLAYEIMR EGGKKLCWQR  780
*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g011480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686550.0AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420670.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
RefseqXP_010420671.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
RefseqXP_019083882.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2
RefseqXP_019083883.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLR0FBV10.0R0FBV1_9BRAS; Uncharacterized protein
STRINGXP_010420670.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]