PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g010530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 265aa    MW: 30606.3 Da    PI: 8.886
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g010530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.5e-1719111197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l ++d +++ +  +p +f+++++ ++  s  ++l+  +g sW++++  +++ +  ++ +kGW +F ++n+L  ++f++F+++g+++f   v
  Csa08g010530.1  19 FFKILRREDLSSEIMRGIPLNFIKNIS-EEDLSANIVLKVAWGSSWTIRI--SRNLSFyFMEKKGWDQFLSDNDLGNNEFLTFTHKGHMCF--SV 108
                     99*********************7774.456999****************..888888466679**********************99999..77 PP

                     EEE CS
              B3  95 kvf 97 
                     +++
  Csa08g010530.1 109 GIY 111
                     775 PP
2B335.81.4e-111832601999
                     -HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  19 pkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     pk+f   h+ k  e+++ ++ d e+  sW+v ++++ +  +  + +GW + +k+ gL  gD+++F+l++   +e++v+v r+
  Csa08g010530.1 183 PKTFEWLHMPK--ETTMFKIHDpERETSWDVMYKFTTNNMQSRFCAGWIRLAKDIGLVIGDVCTFTLVK--PTEMLVTVSRR 260
                     56665555433..5568999996777*********77777778889********************976..77789999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1813113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-1814117IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-1717111No hitNo description
PfamPF023624.5E-1519111IPR003340B3 DNA binding domain
PROSITE profilePS5086312.44919114IPR003340B3 DNA binding domain
SMARTSM010191.9E-1919114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-12164260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.814165261IPR003340B3 DNA binding domain
CDDcd100171.79E-13166255No hitNo description
SuperFamilySSF1019361.02E-15166260IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-10168261IPR003340B3 DNA binding domain
PfamPF023625.0E-8191260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVRNRMFGQV KEEEDNPAFF KILRREDLSS EIMRGIPLNF IKNISEEDLS ANIVLKVAWG  60
SSWTIRISRN LSFYFMEKKG WDQFLSDNDL GNNEFLTFTH KGHMCFSVGI YQIDGKELLR  120
PRKSAPTVAS SSAESTGRRQ TEKSKKKKKI KVESICEDSE DDTLGPEFII TIKKSYLIFL  180
GTPKTFEWLH MPKETTMFKI HDPERETSWD VMYKFTTNNM QSRFCAGWIR LAKDIGLVIG  240
DVCTFTLVKP TEMLVTVSRR EINL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g010530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454030.11e-156PREDICTED: B3 domain-containing protein At5g18090-like
SwissprotQ9FK611e-123Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLR0FLU31e-126R0FLU3_9BRAS; Uncharacterized protein
STRINGXP_010454030.11e-155(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-124B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]