PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g010360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 309aa    MW: 35667.8 Da    PI: 10.1734
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g010360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.7e-2019111197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l ++d +++ + ++p + +++++ +k +s++++l+ ++g sW+vk+  +k++   y+  +GW++Fv++ngL e++ ++F+++++++f  +v
  Csa08g010360.1  19 FFKILRREDLSSEIMRMIPHHLIRSIS-NKSSSFKMVLKVPWGSSWQVKI--SKNPIFhYMEDRGWNQFVNDNGLGENEYITFTHEENMCF--NV 108
                     99***********************96.45799*****************..9***9966777**********************999**9..77 PP

                     EEE CS
              B3  95 kvf 97 
                      ++
  Csa08g010360.1 109 NIY 111
                     766 PP
2B353.64.1e-172293061597
                     -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      l +pkkf++ h+ +  e+k  ++ +++g +sWev++    ++ +  +++GW++F+k+ gL++gD+++Fkl++   +e++vkv 
  Csa08g010360.1 229 FLGIPKKFVDMHMPN--ETKVFKIHHPRGkKSWEVTY--FVTDVQSRFSAGWSRFAKELGLEVGDVCTFKLIE--PTEMCVKVS 306
                     368*********866..56689999999989******..4444455699*********************986..677788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-2013115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-2014118IPR015300DNA-binding pseudobarrel domain
CDDcd100176.88E-1817111No hitNo description
PfamPF023623.3E-1819112IPR003340B3 DNA binding domain
PROSITE profilePS5086313.05619114IPR003340B3 DNA binding domain
SMARTSM010191.2E-2319114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788215308IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-20215306IPR015300DNA-binding pseudobarrel domain
CDDcd100179.74E-17216307No hitNo description
Gene3DG3DSA:2.40.330.101.3E-19216307IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-17218308IPR003340B3 DNA binding domain
PfamPF023623.8E-13229305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVRNRLFGQV MEEGDNPAFF KILRREDLSS EIMRMIPHHL IRSISNKSSS FKMVLKVPWG  60
SSWQVKISKN PIFHYMEDRG WNQFVNDNGL GENEYITFTH EENMCFNVNI YEANGKEMLR  120
PRQSSTVTSS CGRNKREERK SIHIDVKKEV ETESFSESSY HGLKTAESTR GRSKQKQELN  180
LRKREAKETT KSNKSKNRKV DTVSNDSEAG TSSLLPEFKI TIKKSHLLFL GIPKKFVDMH  240
MPNETKVFKI HHPRGKKSWE VTYFVTDVQS RFSAGWSRFA KELGLEVGDV CTFKLIEPTE  300
MCVKVSKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g010360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420536.10.0PREDICTED: B3 domain-containing protein At5g18000-like
SwissprotQ9FJG21e-169Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLR0FIQ90.0R0FIQ9_9BRAS; Uncharacterized protein
STRINGXP_010420536.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-172VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]