PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g010060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 213aa MW: 23425.8 Da PI: 6.7933 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.2 | 2.3e-07 | 9 | 26 | 40 | 57 |
-HHHHHHHHHHHHHHHHC CS Homeobox 40 terqVkvWFqNrRakekk 57 +++V++WFqNrR + ++ Csa08g010060.1 9 GDANVFYWFQNRRSRSRR 26 579************997 PP | |||||||
2 | Wus_type_Homeobox | 44.8 | 3e-15 | 1 | 28 | 38 | 65 |
Wus_type_Homeobox 38 eLeeyGkiedkNVfyWFQNrkaRerqkq 65 +Le++G+++d+NVfyWFQNr++R+r++q Csa08g010060.1 1 MLEKFGAVGDANVFYWFQNRRSRSRRRQ 28 599***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 8.989 | 1 | 27 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 6 | 32 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.66E-6 | 6 | 33 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.8E-5 | 9 | 26 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MLEKFGAVGD ANVFYWFQNR RSRSRRRQRQ LQAATAAPAT SGGAADHQHM TAMTMHQYPY 60 RNSEIDLGFG SCSNSSSANY FLNGTSSSSQ VSSFLLGLSS SSGGCETNGM ENFFTMFGHE 120 SDHHHQHSSN AHSMFCPSDE NSNFQYQQGL MTVFINGVPT EVTKGRIDMK ATFGEDSVLL 180 HSSGLPLPTD EFGFLMHSLQ HGQAYFLVPR QT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g010060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251403 | 0.0 | AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084718.1 | 1e-158 | PREDICTED: WUSCHEL-related homeobox 12-like | ||||
Swissprot | Q8GY25 | 2e-97 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | D7LXM9 | 1e-106 | D7LXM9_ARALL; Predicted protein | ||||
STRING | XP_010420510.1 | 1e-157 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 9e-87 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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