PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g009700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 529aa    MW: 57809.2 Da    PI: 4.5486
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g009700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.62.9e-1321625211374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la+al++r+  la++++ +m ++a+yf+eALa+r++r        ++ps+++ + s eel  +  f++ sP+lkf+h
  Csa08g009700.1 162 LVQALVACAEAVQQENLSLADALVKRVGSLAASQAGAMGKVATYFAEALARRIYR--------IHPSSAAVDPSFEEL-LQMNFYDSSPYLKFAH 247
                     689****************************************************........555555543444443.4446************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIleav  ++ vH+iD++++qG+QWpaL+qaLa Rp+gpps+R+Tgvg+p+  ++e ++e+g++La++A+++gv+fefn+l+++rl dle
  Csa08g009700.1 248 FTANQAILEAVTMARGVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGAPS--NREGIQELGWKLAQLAQAVGVEFEFNALTTERLPDLE 340
                     ******************************************************88..9************************************ PP

            GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +++++++p  E+l+Vn+v++lh +l++++s+e+    +L +vk ++P +v+vveqea+hn+  Fl+rf eal+yys+lfdsle ++     ++++
  Csa08g009700.1 341 PDMFETRPeSETLVVNSVFELHPVLAQPGSIEK----LLATVKAVKPSIVTVVEQEANHNGVVFLDRFNEALHYYSSLFDSLEDSVVIP-GQDRV 430
                     ********9************************....*********************************************9998655.55667 PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++lgr+i nvva+eg +r+erhetl +Wr+r+++aGF pv+l+++a kqa+lll+ ++ +dgyrvee++gsl+l W+++pLv++SaW+
  Csa08g009700.1 431 MSEVYLGRQILNVVAAEGIDRVERHETLDQWRRRMGTAGFDPVNLGYDAFKQASLLLALFGgGDGYRVEENDGSLMLAWQTKPLVAASAWK 521
                     78888*************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-2938104IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.4E-3438111No hitNo description
PROSITE profilePS5098564.344136500IPR005202Transcription factor GRAS
PfamPF035141.0E-129162521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MKRSHQETYL EQQEAPSVAE YGKKLEGSSV GGGDDNIDEL LAALGYKVRS SDMADVANKL  60
EQLEMVLSND VVGSSNSFLN DTVHYNPSDL SGWAQTMLSG LSYYPDLDPT RVCDLRPITN  120
DDESCCSSNS SNKRIRLGPW CDSVSSESTR SVVLIEETGI RLVQALVACA EAVQQENLSL  180
ADALVKRVGS LAASQAGAMG KVATYFAEAL ARRIYRIHPS SAAVDPSFEE LLQMNFYDSS  240
PYLKFAHFTA NQAILEAVTM ARGVHVIDLG LNQGMQWPAL MQALALRPGG PPSFRLTGVG  300
APSNREGIQE LGWKLAQLAQ AVGVEFEFNA LTTERLPDLE PDMFETRPES ETLVVNSVFE  360
LHPVLAQPGS IEKLLATVKA VKPSIVTVVE QEANHNGVVF LDRFNEALHY YSSLFDSLED  420
SVVIPGQDRV MSEVYLGRQI LNVVAAEGID RVERHETLDQ WRRRMGTAGF DPVNLGYDAF  480
KQASLLLALF GGGDGYRVEE NDGSLMLAWQ TKPLVAASAW KLAAELRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6415652013378Protein SCARECROW
5b3h_A3e-6415652012377Protein SCARECROW
5b3h_D3e-6415652012377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g009700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172260.0AK117226.1 Arabidopsis thaliana At5g17490 mRNA for RGA-like protein, complete cds, clone: RAFL16-78-A02.
GenBankAL3911500.0AL391150.1 Arabidopsis thaliana DNA chromosome 5, BAC clone K3M16 (ESSA project).
GenBankBT0059050.0BT005905.1 Arabidopsis thaliana At5g17490 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420475.10.0PREDICTED: DELLA protein RGL3
SwissprotQ9LF530.0RGL3_ARATH; DELLA protein RGL3
TrEMBLR0H0W30.0R0H0W3_9BRAS; Uncharacterized protein
STRINGXP_010420475.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.10.0RGA-like protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wild M,Achard P
    The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.
    Plant Signal Behav, 2013. 8(4): p. e23891
    [PMID:23425858]
  3. Shi H,Wei Y,Wang Q,Reiter RJ,He C
    Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis.
    J. Pineal Res., 2016. 60(3): p. 373-9
    [PMID:26887824]
  4. Shi H,Liu W,Wei Y,Ye T
    Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis.
    J. Exp. Bot., 2017. 68(5): p. 1239-1249
    [PMID:28158805]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]