PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g009620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 675aa    MW: 73392 Da    PI: 6.6587
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g009620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11307363155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  Csa08g009620.1 307 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 363
                     57*******************88885445536655.779999**************98 PP
2AP250.93.9e-16406457155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Csa08g009620.1 406 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 457
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.92E-19307373No hitNo description
PfamPF008471.2E-8307363IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15307373IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-12308372IPR001471AP2/ERF domain
PROSITE profilePS5103217.319308371IPR001471AP2/ERF domain
SMARTSM003806.2E-23308377IPR001471AP2/ERF domain
PRINTSPR003673.5E-6309320IPR001471AP2/ERF domain
PfamPF008474.9E-11406457IPR001471AP2/ERF domain
CDDcd000181.93E-24406467No hitNo description
SuperFamilySSF541711.7E-17406467IPR016177DNA-binding domain
PROSITE profilePS5103218.742407465IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17407466IPR001471AP2/ERF domain
SMARTSM003805.0E-33407471IPR001471AP2/ERF domain
PRINTSPR003673.5E-6447467IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MNSMNNWLGF SLSPHDQNHH HTDLDSSPTT TAVDVAGEYC FDLAAAASDG SSAVQTSFAS  60
PFGVVLEAFT RDNNSHSRDW DINSGACNTI HNNEPNGPKL ENFLGRNSTI YNTNENVGDG  120
SGGCGGDGGG GGSLGLSMIK TWLSNQPVAN GNHQDNRNGA RGLSLSMNSS TTCDSNNNNN  180
NNDVVQEKTI VDVVEATPKK TIESFGQRTS IYRGVTSLGH SNGDGGGGGS LGLSMIKTWL  240
SNQPVANGNH QDNRNGARGL SLSMNSSTTC DSNNNNNNND VVQEKTIVDV VEATPKKTIE  300
SFGQRTSIYR GVTRHRWTGR YEAHLWDNSC KREGQTRKGR QGGYDKEEKA ARAYDLAALK  360
YWGTTTTTNF PMSSYEKEVE EMKHMTRQEY VASLRRKSSG FSRGASIYRG VTRHHQHGRW  420
QARIGRVAGN KDLYLGTFGT QEEAAEAYDI AAIKFRGLSA VTNFDMSRYN VKAILESPSL  480
PIGSSAKRLK EVNSPVPSMM ISNNVSESAS NVGGWQNAAF QHHQGMDLSV LPQQQERYVG  540
YYNGGNLSSE STRVCSKQEE EQQRFLSNSI DHHSSTSDDS VTVCGNVVGY GGYQGFAIPV  600
GTSVNCDAFT AAEIAYNARN HYYYAQRQQQ QQIHQQIPEG DFPVAISNNV GSNMYYHGEC  660
GGEGASMFTV WNGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g009620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856840.0AY585684.1 Arabidopsis thaliana clone at5g17430 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420464.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ40.0BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLR0GZ170.0R0GZ17_9BRAS; Uncharacterized protein
STRINGXP_010420463.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]