PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g008710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 416aa    MW: 45425.6 Da    PI: 7.6049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g008710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.4e-104872226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C+++ rtG C++G++C+F+H+
  Csa08g008710.1 48 GEPDCSYYIRTGLCRFGSTCRFNHP 72
                    789*********************8 PP
2zf-CCCH39.21.2e-1294118327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tGtCk+G +CkF+H++
  Csa08g008710.1  94 QPECEFYMKTGTCKFGVTCKFHHPR 118
                     799********************96 PP
3zf-CCCH37.53.9e-12140164327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C++f+rtG+Ck+G++CkF+H++
  Csa08g008710.1 140 EDDCSYFLRTGHCKFGGTCKFNHPQ 164
                     578********************97 PP
4zf-CCCH37.83.3e-12328353227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++lC f++r+G+Ck+G++CkF H++
  Csa08g008710.1 328 GEPLCVFYSRYGICKFGPSCKFDHPM 353
                     579*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-44673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1364674IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-74872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-45273IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-591118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0891119IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1094118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-597118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305137165IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5137164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4143163IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.08286303IPR000571Zinc finger, CCCH-type
SMARTSM003568.1286307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192326354IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7326353IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9328353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5329353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4331351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDFDSRVPIT RESTSLSPLL HQNAMWQMNL GSDETMSGGD GFYPERQGEP DCSYYIRTGL  60
CRFGSTCRFN HPHDRKLVIA TARTKGEYPE RIGQPECEFY MKTGTCKFGV TCKFHHPRNN  120
VGTDGRVSVD VLGYPLRPNE DDCSYFLRTG HCKFGGTCKF NHPQTQSTKL MVSLRGSPVY  180
SALQSLTGQQ SYSWPRTSCL ATPPRFQDPS SIASLVLPQG GVVSVQGWNG FGGQLGSLSP  240
SGSDQNYRNQ RQNDAEESSG SQGGVFSSGF HSGSSVPLGL YAFPERPGQL ECQFYMKTGD  300
CKFHHPRDRQ TPAPDCVLST VGLPLRLGEP LCVFYSRYGI CKFGPSCKFD HPMGVFTYNN  360
NAAAPSSSSS SSLHQETAIT TQLRNLLVSS SVEATLPSSV SDTTSAKDTT VDAQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g008710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1388720.0AF138872.1 Arabidopsis thaliana zinc finger protein 3 (ZFN3) mRNA, complete cds.
GenBankAY0846340.0AY084634.1 Arabidopsis thaliana clone 113763 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420349.10.0PREDICTED: zinc finger CCCH domain-containing protein 57 isoform X1
SwissprotQ8L7N80.0C3H57_ARATH; Zinc finger CCCH domain-containing protein 57
TrEMBLR0H7930.0R0H793_9BRAS; Uncharacterized protein
STRINGXP_010420349.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.10.0zinc finger nuclease 3
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]