PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g008230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 750aa    MW: 84191.8 Da    PI: 6.4322
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g008230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.27.6e-24351400251
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                     +k+++++d +++F+lpi++AA+e++vc+Tv+K+iCR+ G++RWPhRkik 
  Csa08g008230.1 351 TKKMTVKDFRMHFHLPIESAAREMKVCPTVIKKICREGGLMRWPHRKIKC 400
                     799*********************************************95 PP
2DUF26087.22.2e-27454556198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++  +     p++q++++ +++k++G++ +++l++a+p++ r+++++sl+ eA+ r+ +P+yG+vg+++++++ql+q+
  Csa08g008230.1 454 SCNGCRVLRKGCSENCSIRSSLawiesPKSQANATVFLAKFYGRTGLVNLINAVPNHLRPAIFRSLLHEACGRIVNPIYGSVGLLWSGSWQLCQA 548
                     6*********************************************************************************************9 PP

          DUF260  91 kaelallk 98 
                      ++++l +
  Csa08g008230.1 549 PVDAVLKG 556
                     99888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.086341422IPR003035RWP-RK domain
PfamPF020421.0E-20353399IPR003035RWP-RK domain
PROSITE profilePS5089115.775453559IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-21454551IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MAGDDDPKPS ALVKDNADEE DPYINDPLDE FRGFTDEDIQ NVMADFNPTL MDISFTENTP  60
PPSMCLPLPT DVDQTQLMHE LDLSITDYNI NDEFDGMSSF VDDDYTISWD MFEPSNDDPN  120
GNINNDVPQE IRNVGETTRL EVSTRVFGGA NGPNFETGGP STVHVPRIAD RMFVVSDPNF  180
VCPCCTMLRE VVHAKEREIM NTLIIFGGTG FLCHALLLTQ LLASDPMEPP PQPQPQPQRF  240
YLNDLTMEEV KNFIEEYCSE RVASGLTLMQ DTNAAFYQAM SVNSIFNQWP EPMLALPTCP  300
EVPTSLVSPD EALGVRPVPL NVIPREQATT GVPKERKKRK QTPLAAQRER TKKMTVKDFR  360
MHFHLPIESA AREMKVCPTV IKKICREGGL MRWPHRKIKC LLTRIESLKK SLCTAKDGEA  420
KARIEAEIER LQRDIERICS DALKNAKNQD MRLSCNGCRV LRKGCSENCS IRSSLAWIES  480
PKSQANATVF LAKFYGRTGL VNLINAVPNH LRPAIFRSLL HEACGRIVNP IYGSVGLLWS  540
GSWQLCQAPV DAVLKGEAIT PIATDTAANG QGPPIEVYDI RHISSKEENS GENGSSHHRK  600
RYKTRRAKPK RKEKSITDHE SSSSLSHHQS ESNGKETVKF PVELELKLGI EPVLNHVVVV  660
PVKKRRMGGQ GRRFINAAAR LEPKCLPKTG SHDFLRHTDQ RLGESIAFVQ LAFWYDTQTT  720
VATNWHSGHR PEEDLLQLQI TAVENEAMKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1598611RKRYKTRRAKPKRK
2604612RRAKPKRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g008230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420284.10.0PREDICTED: uncharacterized protein LOC104705893
TrEMBLA0A178UGY41e-171A0A178UGY4_ARATH; Uncharacterized protein
STRINGXP_010420284.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-77LOB domain-containing protein 41