PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g008010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 360aa    MW: 39788.2 Da    PI: 6.6898
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g008010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box36.21.3e-115297342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     r+C+ +e+ ++ +fC+ +   lC  C +e+H+       H++vp+
  Csa08g008010.1 52 VRVCQSCERAPAAFFCKADAASLCTACDSEIHSAnplarrHQRVPI 97
                    689*****************************66899999**9997 PP

2CCT64.53.2e-22290334145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     R+a+++RY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e
  Csa08g008010.1 290 RQARVMRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKRKE 334
                     99****************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-8754IPR000315B-box-type zinc finger
PROSITE profilePS5011910.58754IPR000315B-box-type zinc finger
CDDcd000216.88E-71154No hitNo description
PROSITE profilePS5011912.0025097IPR000315B-box-type zinc finger
PfamPF006433.7E-95297IPR000315B-box-type zinc finger
CDDcd000212.15E-95397No hitNo description
SMARTSM003362.7E-125597IPR000315B-box-type zinc finger
PfamPF062031.4E-16290332IPR010402CCT domain
PROSITE profilePS5101716.549290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLKEESNWAQ VCDSCRSAAC TVYCHADSAY LCTSCDAQVH AVNRLASRHG RVRVCQSCER  60
APAAFFCKAD AASLCTACDS EIHSANPLAR RHQRVPILPI SGNSYGSMET NHSCETTVTD  120
PENSMVVVGQ EEEDRDEAEA ASWLLPNLGK NSGNNNNSQN NGFSIGDEYL DLVDYSSSMD  180
QSSQYQQHRN VPERSYRGDG VVPLQVDESK SHKHHEELNF ELGITYAPPS SSNGFISHMV  240
HVSSIDLGVV PESTTKSTTS DATVSHPISP KAVTDQIPEP PAQMLSPIER QARVMRYREK  300
KKMRKFEKTI RYASRKAYAE KRPRIKGRFA KRKEVDAEAD QAFSTTLTFD TGYGIVPSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297303REKKKMR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g008010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0650011e-169AY065001.1 Arabidopsis thaliana AT5g15850/F14F8_230 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083828.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 1-like
SwissprotO500550.0COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLR0HBC40.0R0HBC4_9BRAS; Uncharacterized protein
STRINGXP_010420264.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-158CONSTANS-like 1
Publications ? help Back to Top
  1. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]
  2. An C, et al.
    Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(42): p. E8930-E8939
    [PMID:28973940]
  3. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]