PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g007290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 264aa MW: 28623.3 Da PI: 8.8905 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.2 | 7.2e-32 | 55 | 110 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 + YkeClkNhAa++Ggha+DGCgEfmps+ + +++++l+CaACgCHRnFHRre + Csa08g007290.1 55 TPYKECLKNHAARIGGHALDGCGEFMPSPAYNsNDPTTLTCAACGCHRNFHRREDD 110 56***************************999889******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-26 | 47 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-27 | 56 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.3E-31 | 57 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.803 | 57 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-28 | 169 | 234 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.14E-18 | 170 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-24 | 177 | 233 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHNHLASEA AAVATPYKEC 60 LKNHAARIGG HALDGCGEFM PSPAYNSNDP TTLTCAACGC HRNFHRREDD PLSASAVVPA 120 IEFRPHNRHQ LPPPPPPHPV GIRSPDDDDS ASPPPISSSY MLLALSGGAK TAGPMSRKRF 180 RTKFSQYQKE KMLEFAERVG WRMPRADDVA VKEFCREIGV DKSVFKVWMH NNKISGRGGA 240 KRANGGGDSR ESVVPTNGSF SST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 176 | 236 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g007290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL353993 | 0.0 | AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project). | |||
GenBank | BT012195 | 0.0 | BT012195.1 Arabidopsis thaliana At5g15210 gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420179.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q9LXG0 | 1e-159 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A178UMR3 | 1e-157 | A0A178UMR3_ARATH; ZHD8 | ||||
STRING | XP_010420179.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-148 | homeobox protein 30 |
Publications ? help Back to Top | |||
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