PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa08g007210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 542aa MW: 58341.3 Da PI: 6.7836 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.6e-30 | 225 | 284 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+ Csa08g007210.1 225 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 284 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 210 | 286 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-27 | 218 | 286 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.69 | 220 | 286 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-37 | 225 | 285 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-27 | 226 | 284 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 542 aa Download sequence Send to blast |
MEVLLKLPAS DSPLKDKVFG SVKDDGDHQE LESAKAEMSE VKEENEKLKG MLERIESDYK 60 TLKLRFFDII QQEPSDNPTQ NQNHPKPNTT DLSSFDQERE LVSLSLGRRS SSPSDSIPKK 120 EEKDAKSAEF NADKELTKAG LTLGINNGDG RELNVSLSMD NTANSSLENS TEEAPGETWP 180 PSKVTGKRSS PAPASGGDVE GEAGQQNHVK RARVCVRARC DTPTMNDGCQ WRKYGQKIAK 240 GNPCPRAYYR CTVAPGCPVR KQVQRCADDM SILITTYEGT HSHPLPLSAT TMASTTSAAA 300 SMILSGSSSS SAAEIIGNNL YDNSRFNNSN KSFYSPTLHS PLHPTVTLDL TAPQHPSSSS 360 LPSLNFNKFS NSFQRFPSTS LNFSSNASSS STSSNLNLPA IWGNGYSSYT PYPYNNVQFG 420 TSNLGKTVQN SQSLTETLTK ALTSDPSFHS VIAAAISSMV GSNGEQQVAG PRNSIQQTTT 480 TNNNKGCGGY FSSLLMSNIM ASNQTGASLD QPSSQLPPFS MFKNSSSSSS TTSFVNKEEK 540 S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 212 | 286 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa08g007210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ012171 | 0.0 | FJ012171.1 Brassica napus WRKY72 transcription factor (WRKY72) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420167.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
Swissprot | Q9LXG8 | 0.0 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | D7M6R7 | 0.0 | D7M6R7_ARALL; WRKY DNA-binding protein 72 | ||||
STRING | XP_010420167.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15130.1 | 0.0 | WRKY DNA-binding protein 72 |