PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g006810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 202aa MW: 22967.9 Da PI: 8.8032 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38 | 3.7e-12 | 2 | 36 | 14 | 48 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d+vk +G+g+W++Ia++ g++R++k+c++rw +yl Csa08g006810.1 2 DYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYL 36 89*******************************97 PP | |||||||
2 | Myb_DNA-binding | 61.6 | 1.7e-19 | 42 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l Csa08g006810.1 42 RGNFTEQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 87 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.644 | 1 | 36 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 1 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.4E-10 | 2 | 36 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-6 | 2 | 36 | No hit | No description |
SMART | SM00717 | 1.5 | 2 | 38 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.77E-24 | 2 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.737 | 37 | 91 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-19 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-18 | 42 | 87 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-14 | 44 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 44 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDYVKAHGKG HWNRIAKKTG LKRCGKSCRL RWMNYLSPNV KRGNFTEQEE DLIIRLHKLL 60 GNRWSLIAKR VPGRTDNQVK NYWNTHLSKK LGIKDPKTKQ SNGDIVYQIN LPNPTETSEA 120 TKITNIDGNN NILGDINLPN PTETSEATKI TNIDGNNNIL GDVIQEDRQG SNYLSSLWVH 180 EDEFELSTLT NMMDFIDGHC F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 1 | 91 | 19 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g006810.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493749 | 0.0 | AB493749.1 Arabidopsis thaliana At5g14750 mRNA for hypothetical protein, partial cds, clone: RAAt5g14750. | |||
GenBank | AY519623 | 0.0 | AY519623.1 Arabidopsis thaliana MYB transcription factor (At5g14750) mRNA, complete cds. | |||
GenBank | BT026346 | 0.0 | BT026346.1 Arabidopsis thaliana At5g14750 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084715.1 | 1e-123 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 1e-117 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A384KIP7 | 1e-114 | A0A384KIP7_ARATH; WER1 | ||||
TrEMBL | C0SVP6 | 1e-114 | C0SVP6_ARATH; Uncharacterized protein At5g14750 (Fragment) | ||||
TrEMBL | D7M6M6 | 1e-114 | D7M6M6_ARALL; Uncharacterized protein | ||||
STRING | XP_010420126.1 | 1e-122 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-119 | myb domain protein 66 |