PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g005890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 212aa    MW: 23506.8 Da    PI: 5.0059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g005890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-191867255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Csa08g005890.1 18 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 67
                    678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-311774No hitNo description
SMARTSM003807.1E-341881IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451875IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-211976IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-291975IPR001471AP2/ERF domain
PfamPF008473.7E-121967IPR001471AP2/ERF domain
PRINTSPR003672.3E-81930IPR001471AP2/ERF domain
PRINTSPR003672.3E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNTTSSKSKK KQEEAGTRFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR  60
AARSMRGTRA RTNFVYSDMP PSSSVTSIVS PDDPPPPPPP PPAPPSDDPV DYMMIFNQYS  120
STDSPMLQPH CDQVDSYVFG GSHSSTSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWSGD  180
DYSAEYVHSP MFSRMPPVSD SLPQGFNHFG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-201674362ATERF1
3gcc_A2e-201674362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g005890.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052300.0AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
GenBankAY5608520.0AY560852.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13910) mRNA, complete cds.
GenBankBT0249190.0BT024919.1 Arabidopsis thaliana At5g13910 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420002.11e-154PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9M6441e-128LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLR0HAG61e-129R0HAG6_9BRAS; Uncharacterized protein
STRINGXP_010420002.11e-154(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-91ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]