PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g002540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 124aa    MW: 14211.6 Da    PI: 10.4453
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g002540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.3e-12996389
                    EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3  3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                    k+l+  dv+  g l+lpk+ +e++       +++e++++      + +s++vkl  + + +++ + +GWk+ v+  gLk+gD + ++ ++ ++
  Csa08g002540.1  9 KKLSDTDVSVVGFLTLPKNTMENIqkkmkTTIPREGIQVE--VvANDKSYTVKL--KEHNKGFRMYSGWKNIVNTRGLKSGDLLKLYWQD-TK 96
                    888889999999*********9888765533344554444..43577*******..999999**********************999533.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-14396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-11495IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-126100No hitNo description
SMARTSM010190.0027112IPR003340B3 DNA binding domain
PROSITE profilePS508639.0657112IPR003340B3 DNA binding domain
PfamPF023624.9E-9997IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDPNMLIAKK LSDTDVSVVG FLTLPKNTME NIQKKMKTTI PREGIQVEVV ANDKSYTVKL  60
KEHNKGFRMY SGWKNIVNTR GLKSGDLLKL YWQDTKFILT EGKLNILLNE NRIRKENAAQ  120
VWQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g002540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867663.16e-32B3 domain-containing protein At1g08985
TrEMBLA0A397ZAE98e-33A0A397ZAE9_BRACM; Uncharacterized protein
STRINGXP_010513332.12e-43(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.18e-31B3 family protein