PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g001850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 802aa    MW: 87300.5 Da    PI: 6.0988
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g001850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.8e-21135190156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Csa08g001850.1 135 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190
                     688999***********************************************999 PP

2START205.81.8e-643235421206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     ela+ a++elvk+a +eep+Wvks     +++n+de++++f+++k     +ea+r+sg+v+ ++  lve+l+d++ +W+e+++    +a+t++ i
  Csa08g001850.1 323 ELALNAMDELVKLAHSEEPLWVKSLdgerDELNQDEYMRTFSSTKPtgLATEASRTSGMVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDII 416
                     57899************************************9999999***************************.******************* PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     s g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+++ ++++  s+v+R  +lpSg++++++sng+ kvtwveh++++
  Csa08g001850.1 417 SGGmagtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIEPIRENSGGSPVIR--RLPSGCVVQDMSNGYAKVTWVEHAEYD 509
                     ***********************************************************9******..*************************** PP

                     SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++h+l+r+l++sgl +g ++w+atlqrqce+
  Csa08g001850.1 510 ENQIHQLYRPLLRSGLGFGSQRWLATLQRQCEC 542
                     *******************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-20122192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-22123192IPR009057Homeodomain-like
PROSITE profilePS5007117.297132192IPR001356Homeobox domain
SMARTSM003899.5E-18133196IPR001356Homeobox domain
CDDcd000861.47E-18134192No hitNo description
PfamPF000462.0E-18135190IPR001356Homeobox domain
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PROSITE profilePS5084841.903314545IPR002913START domain
CDDcd088751.21E-110318541No hitNo description
SuperFamilySSF559611.1E-28318542No hitNo description
SMARTSM002341.3E-36323542IPR002913START domain
PfamPF018526.0E-58323542IPR002913START domain
SuperFamilySSF559613.21E-21561785No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSLPLTKSVY  60
ASPGLSLALE QPERGTNNRG EASMRNNNVG GGGDNFDGSV NRRSREEEHE SRSGSDNVEG  120
ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF  180
WFQNRRTQMK TQLERHENAL LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE  240
HHLRIENARL KDELDRVCNL TGKFLGHHHH HYNSSLELAV GTNNGGNFAF PPDFGGGACL  300
PPPQQQQQQT GINGIDQKSV LLELALNAMD ELVKLAHSEE PLWVKSLDGE RDELNQDEYM  360
RTFSSTKPTG LATEASRTSG MVIINSLALV ETLMDSNRWT EMFPCNVARA TTTDIISGGM  420
AGTINGALQL MNAELQVLSP LVPVRNVNFL RFCKQHAEGV WAVVDVSIEP IRENSGGSPV  480
IRRLPSGCVV QDMSNGYAKV TWVEHAEYDE NQIHQLYRPL LRSGLGFGSQ RWLATLQRQC  540
ECLAVLMSSS VTAQDNTSIT PGGRKSMLKL AQRMTFNFCS GISAPSVHNW SKLTVGNVDP  600
DVRVMTRKSV DDPGEPPGIV LSAATSVWLP ASPQRLFDFL RNERMRCEWD ILSNGGPMQE  660
MAHIAKGQDQ GVSLLRSNAM NANQSSMLIL QETCIDASGA LVVYAPVDIP AMHVVMNGGD  720
SSYVALLPSG FAVLPDGGMD GGSSGDSEQR PVGGGSLLTV AFQILVNNLP TAKLTVESVE  780
TVNNLISCTV QKIRAALQCE S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g001850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269680.0AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419627.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
RefseqXP_010419628.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLR0H8W00.0R0H8W0_9BRAS; Uncharacterized protein
STRINGXP_010419627.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]