PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g001850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 802aa MW: 87300.5 Da PI: 6.0988 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.8e-21 | 135 | 190 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Csa08g001850.1 135 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 688999***********************************************999 PP | |||||||
2 | START | 205.8 | 1.8e-64 | 323 | 542 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ela+ a++elvk+a +eep+Wvks +++n+de++++f+++k +ea+r+sg+v+ ++ lve+l+d++ +W+e+++ +a+t++ i Csa08g001850.1 323 ELALNAMDELVKLAHSEEPLWVKSLdgerDELNQDEYMRTFSSTKPtgLATEASRTSGMVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDII 416 57899************************************9999999***************************.******************* PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 s g galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+++ ++++ s+v+R +lpSg++++++sng+ kvtwveh++++ Csa08g001850.1 417 SGGmagtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIEPIRENSGGSPVIR--RLPSGCVVQDMSNGYAKVTWVEHAEYD 509 ***********************************************************9******..*************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqcek 206 ++++h+l+r+l++sgl +g ++w+atlqrqce+ Csa08g001850.1 510 ENQIHQLYRPLLRSGLGFGSQRWLATLQRQCEC 542 *******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-20 | 122 | 192 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-22 | 123 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 132 | 192 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 133 | 196 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.47E-18 | 134 | 192 | No hit | No description |
Pfam | PF00046 | 2.0E-18 | 135 | 190 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 167 | 190 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.903 | 314 | 545 | IPR002913 | START domain |
CDD | cd08875 | 1.21E-110 | 318 | 541 | No hit | No description |
SuperFamily | SSF55961 | 1.1E-28 | 318 | 542 | No hit | No description |
SMART | SM00234 | 1.3E-36 | 323 | 542 | IPR002913 | START domain |
Pfam | PF01852 | 6.0E-58 | 323 | 542 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.21E-21 | 561 | 785 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSLPLTKSVY 60 ASPGLSLALE QPERGTNNRG EASMRNNNVG GGGDNFDGSV NRRSREEEHE SRSGSDNVEG 120 ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF 180 WFQNRRTQMK TQLERHENAL LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE 240 HHLRIENARL KDELDRVCNL TGKFLGHHHH HYNSSLELAV GTNNGGNFAF PPDFGGGACL 300 PPPQQQQQQT GINGIDQKSV LLELALNAMD ELVKLAHSEE PLWVKSLDGE RDELNQDEYM 360 RTFSSTKPTG LATEASRTSG MVIINSLALV ETLMDSNRWT EMFPCNVARA TTTDIISGGM 420 AGTINGALQL MNAELQVLSP LVPVRNVNFL RFCKQHAEGV WAVVDVSIEP IRENSGGSPV 480 IRRLPSGCVV QDMSNGYAKV TWVEHAEYDE NQIHQLYRPL LRSGLGFGSQ RWLATLQRQC 540 ECLAVLMSSS VTAQDNTSIT PGGRKSMLKL AQRMTFNFCS GISAPSVHNW SKLTVGNVDP 600 DVRVMTRKSV DDPGEPPGIV LSAATSVWLP ASPQRLFDFL RNERMRCEWD ILSNGGPMQE 660 MAHIAKGQDQ GVSLLRSNAM NANQSSMLIL QETCIDASGA LVVYAPVDIP AMHVVMNGGD 720 SSYVALLPSG FAVLPDGGMD GGSSGDSEQR PVGGGSLLTV AFQILVNNLP TAKLTVESVE 780 TVNNLISCTV QKIRAALQCE S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g001850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226968 | 0.0 | AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010419627.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Refseq | XP_010419628.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | R0H8W0 | 0.0 | R0H8W0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010419627.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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