PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g001560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 538aa    MW: 61272.5 Da    PI: 6.9145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g001560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.7e-063573941355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R++ N++f+ Lr+++P+ +       ++K +iL  +++Y+++L+
  Csa08g001560.1 357 RRKENEKFSVLRTMVPTvN------EVDKESILNNTIKYLQELE 394
                     6777*************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-4524215IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.833344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-9357404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-5357398No hitNo description
SuperFamilySSF474599.95E-9357408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSLTMADGGV EAVGGRSKRQ NSLLRKQLAL AVRSVQWNYA IFWSSSLTQP GVLEWGEGCY  60
NGDMKKRKKS YESHYKHGLQ RSKQLRKLYL SMLEGDSGTT VSTTHVEHND DDVHSCGDST  120
TNMMLPPDDL SDEEWYYLVS MSYVFSPSQC LPGRASATGE TIWLCNAQYA ENKLFSRSLL  180
ARTVVCFPHL GGVIELGVTE LISEDHSLLQ HIKSCLLEIS FLQKNDDEKK MGIMISGANL  240
MLEEKHQIPL GISDEDLHYK RTVSTVLNYS VDRSSRSDKM IHHRQRNLAS SDPGSSFLRW  300
KQCEQPNSDV VQKQSDLQPQ SQNVLRKMLY NVPLMMRTKR MFPTQRSGMN QDDPSDRRKE  360
NEKFSVLRTM VPTVNEVDKE SILNNTIKYL QELEARVEEL ESCMGSVNFV ERQRKTTENL  420
NDSVLIEETS GNYDDSTKID ENSGETEQVT VFRDKTHLRV KLKETEVVIE VRCSYRDYIV  480
ADIMETLSNL HMDAFSVRSH TLNKFLTLNL KAKFRGAAVA SVGMIKRELR RVIGDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-11242169192Transcription factor MYC3
4rqw_B4e-11242169192Transcription factor MYC3
4rs9_A4e-11242169192Transcription factor MYC3
4yz6_A4e-11242169192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g001560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419591.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLR0FDM90.0R0FDM9_9BRAS; Uncharacterized protein
STRINGXP_010419591.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein