PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g001060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 354aa    MW: 38060 Da    PI: 7.1307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g001060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.5e-16201246555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++++P++      K +Ka++L +++eY+k+Lq
  Csa08g001060.1 201 HNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 246
                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-18194258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.606196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.84E-17201250No hitNo description
PfamPF000102.1E-13201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-18201255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-18202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
DTPAAAAATT TVRSTTAADL PMLDYEVAEL TWENGQLGLH GLGPPRVTAS STKYSTGAGG  60
TLESIVDQAT RLPNPKPTDE LVPWFHHRSS RAAMAMDALV PCSNLQEQQS KPGGVGSTRV  120
GSCSDGRTMA GGKRARVAPE WSGSGSQRLT MDTYDVGFTS TSMGSPDNTI DDHDSMEDEE  180
EKKGGGKSSV STKRSRAAAI HNQSERKRRD KINQRMKTLQ KMVPNSSKTD KASMLDEVIE  240
YLKQLQAQVS MMSRMNMPSM MLPMALQQQQ QLQMSLMSNP MGLGIGMGMP GLGLLDLNSM  300
NRAAAATPNI HANMMPNPFA PMTSPSWDAS SNDTRFQSPL IPDPMAAFLA CSSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRD
2205210RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g001060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885610.0AF488561.1 Arabidopsis thaliana clone bHLH016 putative bHLH transcription factor mRNA, complete cds.
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426522.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ380.0UNE10_ARATH; Transcription factor UNE10
TrEMBLD7M5T40.0D7M5T4_ARALL; Uncharacterized protein
STRINGXP_010426522.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]