PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08945s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 87aa    MW: 10198.7 Da    PI: 10.4065
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08945s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.8e-3298155128
             NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk ++s   + +gl+ktLvfykgrap+g+k+dW+mheyrl
  Csa08945s010.1   9 QNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICS-CVRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 81 
                     579*********************************9999.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.496187IPR003441NAC domain
SuperFamilySSF1019411.7E-31985IPR003441NAC domain
PfamPF023657.0E-161181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
ECRIGSTPQN DWYFFSHKDK KYPTGTRTNR ATVAGFWKAT GRDKIICSCV RRIGLRKTLV  60
FYKGRAPHGQ KSDWIMHEYR LDDTPMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-2898170142NO APICAL MERISTEM PROTEIN
1ut4_B3e-2898170142NO APICAL MERISTEM PROTEIN
1ut7_A3e-2898170142NO APICAL MERISTEM PROTEIN
1ut7_B3e-2898170142NO APICAL MERISTEM PROTEIN
3swm_A3e-2898173145NAC domain-containing protein 19
3swm_B3e-2898173145NAC domain-containing protein 19
3swm_C3e-2898173145NAC domain-containing protein 19
3swm_D3e-2898173145NAC domain-containing protein 19
3swp_A3e-2898173145NAC domain-containing protein 19
3swp_B3e-2898173145NAC domain-containing protein 19
3swp_C3e-2898173145NAC domain-containing protein 19
3swp_D3e-2898173145NAC domain-containing protein 19
4dul_A3e-2898170142NAC domain-containing protein 19
4dul_B3e-2898170142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08945s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0171181e-106AC017118.3 Genomic sequence for Arabidopsis thaliana BAC F6N18 from chromosome I, complete sequence.
GenBankCP0026841e-106CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankEF1018921e-106EF101892.1 Arabidopsis thaliana SND1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304672.13e-59NAC domain-containing protein 12
RefseqXP_010478697.13e-59PREDICTED: NAC domain-containing protein 12
RefseqXP_010497688.17e-61PREDICTED: NAC domain-containing protein 12-like, partial
SwissprotQ9LPI76e-60NAC12_ARATH; NAC domain-containing protein 12
TrEMBLR0IGT77e-58R0IGT7_9BRAS; Uncharacterized protein
STRINGXP_006304672.11e-58(Capsella rubella)
STRINGXP_010478697.11e-58(Camelina sativa)
STRINGXP_010497688.13e-60(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.13e-62NAC domain containing protein 12
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Huang J,Chen F,Wu S,Li J,Xu W
    Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis.
    Sci China Life Sci, 2016. 59(2): p. 194-205
    [PMID:26803299]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]