PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g066190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 337aa    MW: 36392.7 Da    PI: 8.4794
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g066190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.7e-393596263
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                    +++al+cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+PvGgg rknk+sss
  Csa07g066190.1 35 RDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTEGGSLRNIPVGGGIRKNKRSSS 96
                    6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-322487IPR003851Zinc finger, Dof-type
PfamPF027012.2E-333693IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7143993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDTAKWPQEV TKIFESTKRK KKXATPVERK ARPERDQALN CPRCNSLNTK FCYYNNYSLT  60
QPRYFCKDCR RYWTEGGSLR NIPVGGGIRK NKRSSSNSNS SSSPSSSSSS KKPLFSNNSN  120
TPAPLPQLNP KIGEAATTTT KVQDLAFPQG FENAHEVKDL NLAFSQGFGI GGHHHHHHLS  180
NPLVSTSSAL ELLGISNSSA SSNSRPAFMS FPNVHDSSVY TASGFGMSYP QFQEFMRPAL  240
GFSLDGGYAG DPLHQEEGSS GTTPATTNNG RPLLQFESLQ LPVSSPSTNS GGNVKENDHH  300
SDHEHEKEEG EAVGFWNGML SAGTTSAAAS GGGSWH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g066190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419511.10.0PREDICTED: dof zinc finger protein DOF1.8-like
SwissprotQ84JQ81e-142DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLA0A178W2N81e-141A0A178W2N8_ARATH; Uncharacterized protein
STRINGXP_010419511.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-123Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]