PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g066090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 1094aa MW: 122035 Da PI: 6.8084 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.8 | 1e-28 | 803 | 853 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+is+e+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Csa07g066090.1 803 EKTISIEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 853 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.405 | 788 | 873 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-25 | 805 | 853 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.18E-20 | 985 | 1075 | No hit | No description |
SMART | SM00666 | 6.6E-22 | 993 | 1075 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 19.007 | 993 | 1075 | IPR000270 | PB1 domain |
CDD | cd06407 | 5.16E-33 | 994 | 1074 | No hit | No description |
Pfam | PF00564 | 3.6E-17 | 994 | 1074 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.3E-25 | 994 | 1075 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1094 aa Download sequence Send to blast |
MELDDLDLSG TWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSESAGDVG AGDLYVAPSS 60 RFTDYSLLRK SDDTTTATTK EVIIDDNHAP SPFSGLMPSS ENQDNPDSYC AVKAKMTQAL 120 RYFKESTGQQ HLLAQVWAPV KNRGRYVLTT SGQPFVLAPN SNGLHQYRMV SLTYMFSLDG 180 ERDGDLGLPG RVFRKKLPEW TPNVQYYSSK EFSRLGHALH YNVQGTLALP VFEPSRQLCV 240 GVVELIMTSP KINYAPEKGQ GVAGRAFLSG NLCFSRDVTR FCKTDYPLVH YARMFKLTSC 300 FAICNEGRQN ALAEILEILT VVCETYKLPL AQTWVPCRHR SVLAFGGGFK KSCSSFDGSC 360 MGKVCMSTSD LAVYVVDAHV WGFRDACAEH HLQKGQGVAG RAFLSGNLCF SRDLTRFCKT 420 DYPLVHYARM FKLTSCFAVC LKSTYTGDDE YVLEFFLPPA ITDKSEQDFL LGSLFQTMKQ 480 HYSSLKVVSE TELCENEIFL QVVEASEDGM VYSKFEPIRI HHPAPISKDY LELNSPEQKL 540 SLNSDLMAXE TYKLPLAQTW VPCRHRSVLT FGGGFKKSCS SFDGSCMGKF CMSTSDLAVY 600 VVDAHVWGFR DACAEHHLQK GQGVAGRAFL SGNLCFSRDV TRFCKTDYPL VHYARMFKLT 660 SCFAVCLKST FTGDDEYVLE FFLPPAITDK REQDFLLGSL FQTMKQHYSS LKVVSETELC 720 ENEISLEVVE ASEDGMVYSK LEPIRIHHPA PISKDYLELN APEQKLSLNS DLMANGFERF 780 QTLEPLPEAK TVKKSERKRG KTEKTISIEV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH 840 GISRWPSRKI NKVNRSLTRL KHVIDSVQGA DGSLNLTSLS PRPWSHQISP TENQPPKNFP 900 PASTSPPSYL QDVKIENRDA EDSAGSSTSR ASCKVGPICD TRFGLPSLPT HNQEPVRQTA 960 LDDSDSSSKN IANFWTHLSC QDTASPTTLH NKLVSIKATY REDIIRFKIS PESVSIMGLK 1020 QQVAKRLKLE MAAFELKYLD DDSEWVSVSC DADLSECLDT SAAKANTLRL SVHDVTLNFG 1080 SSCESSEENM MCL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g066090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT000933 | 0.0 | BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010418526.1 | 0.0 | PREDICTED: protein NLP6 | ||||
Swissprot | Q8RWY4 | 0.0 | NLP6_ARATH; Protein NLP6 | ||||
TrEMBL | R0GCV5 | 0.0 | R0GCV5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010418526.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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