PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g066090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 1094aa    MW: 122035 Da    PI: 6.8084
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g066090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.81e-28803853252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek+is+e+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
  Csa07g066090.1 803 EKTISIEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 853
                     799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.405788873IPR003035RWP-RK domain
PfamPF020421.1E-25805853IPR003035RWP-RK domain
SuperFamilySSF542771.18E-209851075No hitNo description
SMARTSM006666.6E-229931075IPR000270PB1 domain
PROSITE profilePS5174519.0079931075IPR000270PB1 domain
CDDcd064075.16E-339941074No hitNo description
PfamPF005643.6E-179941074IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.3E-259941075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MELDDLDLSG TWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSESAGDVG AGDLYVAPSS  60
RFTDYSLLRK SDDTTTATTK EVIIDDNHAP SPFSGLMPSS ENQDNPDSYC AVKAKMTQAL  120
RYFKESTGQQ HLLAQVWAPV KNRGRYVLTT SGQPFVLAPN SNGLHQYRMV SLTYMFSLDG  180
ERDGDLGLPG RVFRKKLPEW TPNVQYYSSK EFSRLGHALH YNVQGTLALP VFEPSRQLCV  240
GVVELIMTSP KINYAPEKGQ GVAGRAFLSG NLCFSRDVTR FCKTDYPLVH YARMFKLTSC  300
FAICNEGRQN ALAEILEILT VVCETYKLPL AQTWVPCRHR SVLAFGGGFK KSCSSFDGSC  360
MGKVCMSTSD LAVYVVDAHV WGFRDACAEH HLQKGQGVAG RAFLSGNLCF SRDLTRFCKT  420
DYPLVHYARM FKLTSCFAVC LKSTYTGDDE YVLEFFLPPA ITDKSEQDFL LGSLFQTMKQ  480
HYSSLKVVSE TELCENEIFL QVVEASEDGM VYSKFEPIRI HHPAPISKDY LELNSPEQKL  540
SLNSDLMAXE TYKLPLAQTW VPCRHRSVLT FGGGFKKSCS SFDGSCMGKF CMSTSDLAVY  600
VVDAHVWGFR DACAEHHLQK GQGVAGRAFL SGNLCFSRDV TRFCKTDYPL VHYARMFKLT  660
SCFAVCLKST FTGDDEYVLE FFLPPAITDK REQDFLLGSL FQTMKQHYSS LKVVSETELC  720
ENEISLEVVE ASEDGMVYSK LEPIRIHHPA PISKDYLELN APEQKLSLNS DLMANGFERF  780
QTLEPLPEAK TVKKSERKRG KTEKTISIEV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH  840
GISRWPSRKI NKVNRSLTRL KHVIDSVQGA DGSLNLTSLS PRPWSHQISP TENQPPKNFP  900
PASTSPPSYL QDVKIENRDA EDSAGSSTSR ASCKVGPICD TRFGLPSLPT HNQEPVRQTA  960
LDDSDSSSKN IANFWTHLSC QDTASPTTLH NKLVSIKATY REDIIRFKIS PESVSIMGLK  1020
QQVAKRLKLE MAAFELKYLD DDSEWVSVSC DADLSECLDT SAAKANTLRL SVHDVTLNFG  1080
SSCESSEENM MCL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g066090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0009330.0BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418526.10.0PREDICTED: protein NLP6
SwissprotQ8RWY40.0NLP6_ARATH; Protein NLP6
TrEMBLR0GCV50.0R0GCV5_9BRAS; Uncharacterized protein
STRINGXP_010418526.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25072666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.10.0Nin-like family protein
Publications ? help Back to Top
  1. Liseron-Monfils C, et al.
    Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs.
    Plant Signal Behav, 2014.
    [PMID:24270626]
  2. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  3. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]