PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g065920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 445aa    MW: 47901.2 Da    PI: 4.8222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g065920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-19136186256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Csa07g065920.1 136 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 186
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-16135195No hitNo description
SMARTSM003801.1E-36136199IPR001471AP2/ERF domain
PROSITE profilePS5103223.301136193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-31136194IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22136193IPR016177DNA-binding domain
PfamPF008475.1E-13137186IPR001471AP2/ERF domain
PRINTSPR003677.0E-10137148IPR001471AP2/ERF domain
PRINTSPR003677.0E-10159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEESNDLYQT NFSPRISEIR ASLSQIILGG GPNTLDSIFS LLTPSSSVES ATTSFNTLNP  60
PPPPQLGSSV YLRQRDIIEK FHLQNRAISA PPPPLFSSSF DHHQTSELML QAAAGTPAEA  120
FAAALAAGRT TKKKKLYRGV RQRHWGKWVA EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA  180
YKLRGEYARL NFPNLKDPSE LLGLGDSSKL IALKNAVDGK IQSICQRVRK ERAKKSAKVS  240
KNSSATADSS YSSSPEIISS SPATMTTTAV NSEDSYWVSQ MRLCNSENSS PASVSVSDEI  300
PATTATAAED EDAMMGVDTD GFLLARMPSF DPELIWEXKK SAKVSKSSSA TADSSYSSSP  360
EIISATMTTT AVNSEDSYWV SQMGLCNSEN SSPASVSVSD EIPATTAAAA AAEEDAMMGV  420
DTDGFLLARM PSFDPELIWE VLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19133193263ATERF1
3gcc_A2e-19133193263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g065920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666890.0AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287630.0AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608760.0AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330820.0BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418501.10.0PREDICTED: ethylene-responsive transcription factor ERF061 isoform X1
SwissprotQ9C7W21e-176ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLD7KSA80.0D7KSA8_ARALL; Uncharacterized protein
STRINGXP_010418502.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-139ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]