PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g064440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 639aa    MW: 71166.8 Da    PI: 7.0647
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g064440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.55.2e-1312546351374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL+   ea++s++ +++++++ar s+lasp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e +++ ++e+ +al+++++v+Pi+kf 
  Csa07g064440.1 254 LVNLLTGSLEAIRSRNIAAINHFIARTSDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFI 348
                     5789999****************************99***********************************99********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+    sk el+etg+rL+ fAe+++++fef++ v++rled+
  Csa07g064440.1 349 HFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRTNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFEFHP-VVDRLEDV 438
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk+gE++aVn+v+q+h++l + +  +   +++L l++s++P  +v++eqea+hnse++ +r++++l+yysa+fd+++++l+++s  r+k
  Csa07g064440.1 439 RLWMLHVKEGESVAVNCVMQMHKTLYDGTGGAI--RDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLIRVK 531
                     *************************77666655..89********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee...........sgslvlgWkdr 365
                     +E++l+grei+n+vaceg++r+erh  +++Wr++le+ GF+++ +se+++ q k+llr+++  ++g ++ve +           sg ++l W+++
  Csa07g064440.1 532 IEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGsgNEGfFNVERSdedgdggeggsSGGVTLRWSEQ 626
                     ************************************************************98566689999556678889899899999****** PP

            GRAS 366 pLvsvSaWr 374
                     pL+++SaW+
  Csa07g064440.1 627 PLYTISAWT 635
                     ********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.015228601IPR005202Transcription factor GRAS
PfamPF035141.8E-128254635IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFTR KETPSTRPLG  60
RSISLDNTNN NTKPIERKNS GCSLKQNIKL PPLATTRGNG EGFSWNNDNN NRGKKSLKRL  120
AEEDESCLSR AKRTKCENEG DGDDEGKVCF VPSEVISQPL PSNTNWIDSV ITELAGIGDK  180
DVESSRPAAV KEASGSSTSA SSESQSLSHR GVPEPTNGSR NPYTHRGGST EERTSGNINN  240
NNNHRNDLQR DFELVNLLTG SLEAIRSRNI AAINHFIART SDLASPRGRT PMTRLIAYYI  300
EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF  360
EGKERVHIID FDIKQGLQWP SFFQSLASRT NPPHHVRITG IGESKLELNE TGDRLHGFAE  420
AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGGA IRDFLGLIRS  480
TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLIRV KIEEMLFGRE  540
IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE VLQSKMLLRM YGSGNEGFFN  600
VERSDEDGDG GEGGSSGGVT LRWSEQPLYT ISAWTMGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6226363528379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g064440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418318.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2H1ZEE00.0A0A2H1ZEE0_ARATH; GRAS family transcription factor
STRINGXP_010418317.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein