PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g064370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 351aa    MW: 37044.4 Da    PI: 7.0631
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g064370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-1691139255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Csa07g064370.1  91 LYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 139
                     69***9.55.6*********854...5************************998 PP
2AP251.62.3e-16187235255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Csa07g064370.1 187 LYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 235
                     69***9.55.6*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.73E-1790149No hitNo description
PfamPF008471.1E-990139IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1891149IPR016177DNA-binding domain
PROSITE profilePS5103220.3191147IPR001471AP2/ERF domain
SMARTSM003801.2E-2891153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-2691149IPR001471AP2/ERF domain
CDDcd000185.73E-17186245No hitNo description
PfamPF008471.1E-9186235IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18187245IPR016177DNA-binding domain
SMARTSM003809.0E-29187249IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-26187245IPR001471AP2/ERF domain
PROSITE profilePS5103220.31187243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MADPKNHITE PKAISQASSS SSVTIVPVRT CGDSVSDCAT CENPSPLDSI TSAATTTTVS  60
FAAPSPTTSG HGIKTLMSTD ADISRRKKHP LYRGIRCRSG KWVSEIREPK KTTRVWLGTY  120
PTPEMAAAAY DVAALALKGR DTVLNFPDSL XTTTVSFAAP SSTTSGHGIN TLMSTDADIS  180
RRKKHPLYRG IRCRSGKWVS EIREPKKTTR VWLGTYPTPE MAAAAYDVAA LALKGRDTVL  240
NFPDSVGSYP IPLSSSAAHI RCAAAAAAAA RGACTGAAAV KGGEEKEEEA CDGAGSSNTQ  300
LFVDEEELLN MPGLLADMAK GMMVAPPWMG SPPSDDSPEN SDGESLWSYY *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g064370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473532.11e-109PREDICTED: ethylene-responsive transcription factor ERF026-like
RefseqXP_010473533.11e-109PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN91e-88ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLD7KU333e-94D7KU33_ARALL; Predicted protein
TrEMBLR0GG545e-94R0GG54_9BRAS; Uncharacterized protein
STRINGXP_010473532.11e-108(Camelina sativa)
STRINGXP_010473533.11e-108(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-38ERF family protein