PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g064020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 406aa MW: 46825.7 Da PI: 6.7315

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g064020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.3	5.1e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk++ Csa07g064020.1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDVDLYKIEPWDLQElcKIGNEEQsEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI 100 69**************************.99**********954555554445******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++l+g++ktLvfykgrap+g+k+dW+mheyrle Csa07g064020.1 101 YI-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .8899****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.333	7	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MNSFTQVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLQELCKIGN 60 EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GIPQEEGWVV CRVFKKKLAA TVRKMGDYNP SPSHWYDGQL 180 SFIDSELDSS SPQQFIPNHN YNLHHHHHQL KLPCGLNASS AYAFNNNNNN NNPNLRCKQE 240 LELHYNHMVQ HQQQNNHLRE SVFLQLPQLE SPNSNCSSLP YGSSNNNKNT RDIGNLQQSS 300 NLSHEEQLHQ GNQSFSSLYY DQGVEQVTTD WRVLDKFVAS QLSNEEAAAA ASSHQNDIKI 360 DTRSTAYDQV QVIENDSERV VEMGEEYTNA HAASTSSSCQ IDLWK*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MNSFTQVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLQELCKIGN  60
EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GIPQEEGWVV CRVFKKKLAA TVRKMGDYNP SPSHWYDGQL  180
SFIDSELDSS SPQQFIPNHN YNLHHHHHQL KLPCGLNASS AYAFNNNNNN NNPNLRCKQE  240
LELHYNHMVQ HQQQNNHLRE SVFLQLPQLE SPNSNCSSLP YGSSNNNKNT RDIGNLQQSS  300
NLSHEEQLHQ GNQSFSSLYY DQGVEQVTTD WRVLDKFVAS QLSNEEAAAA ASSHQNDIKI  360
DTRSTAYDQV QVIENDSERV VEMGEEYTNA HAASTSSSCQ IDLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-51	7	157	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g064020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010418270.1	0.0	PREDICTED: NAC domain-containing protein 26-like
Swissprot	F4HYV5	0.0	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	R0GGE4	0.0	R0GGE4_9BRAS; Uncharacterized protein
STRING	XP_010418270.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2111	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	0.0	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]