PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g062260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 341aa    MW: 38200.4 Da    PI: 8.4543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g062260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.7e-53161421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk++++ 
  Csa07g062260.1  16 LPPGFRFHPTDEELVVHYLKKKATSVPLPV-SIIAEIDLYKFDPWELPSKASFGEHEWYFFTPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTC 109
                     79****************************.89***************9888999**************************************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg+kk Lvfy g+ pkg ktdW+mheyrl
  Csa07g062260.1 110 NSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 142
                     *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-648177IPR003441NAC domain
PROSITE profilePS5100560.34116177IPR003441NAC domain
PfamPF023651.6E-2717142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MENMGDSSIG SGHPHLPPGF RFHPTDEELV VHYLKKKATS VPLPVSIIAE IDLYKFDPWE  60
LPSKASFGEH EWYFFTPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL  120
VFYGGKPPKG IKTDWIMHEY RLTDGNLSTT PKPPDIATTR KNSLRLDDWV LCRIYKKNSS  180
QRPTMERVLL REDLMEGMLS KSSANSSSTS VLDNNDNNNN NNNNNNNNSN NSNNNNNNNE  240
EHFFDGMVVS SDKRSLCGQY RMGHEASGSS SFGSFLSSKR FHHTGDLNND NYNVSFVSML  300
SEIPQSSGFH ANGVMDTTSS LGDHGVLRQA FQLPNMNWHS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-731618217170NO APICAL MERISTEM PROTEIN
1ut4_B4e-731618217170NO APICAL MERISTEM PROTEIN
1ut7_A4e-731618217170NO APICAL MERISTEM PROTEIN
1ut7_B4e-731618217170NO APICAL MERISTEM PROTEIN
3swm_A4e-731618220173NAC domain-containing protein 19
3swm_B4e-731618220173NAC domain-containing protein 19
3swm_C4e-731618220173NAC domain-containing protein 19
3swm_D4e-731618220173NAC domain-containing protein 19
3swp_A4e-731618220173NAC domain-containing protein 19
3swp_B4e-731618220173NAC domain-containing protein 19
3swp_C4e-731618220173NAC domain-containing protein 19
3swp_D4e-731618220173NAC domain-containing protein 19
4dul_A4e-731618217170NAC domain-containing protein 19
4dul_B4e-731618217170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g062260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878390.0AY087839.1 Arabidopsis thaliana clone 38858 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418059.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY420.0NAC25_ARATH; NAC transcription factor 25
TrEMBLD7KW470.0D7KW47_ARALL; ANAC025
STRINGXP_010418059.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.10.0NAC domain containing protein 25