PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g060940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YB
Protein Properties Length: 380aa    MW: 42264.8 Da    PI: 4.2982
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g060940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.33.7e-13135226793
           NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                     +lP+a v r++k+ l +     +  i k+a     e +  fi +++s a+d c+  +r+t+++dd++ al ++ f +++eplk+ l+ +++ 
  Csa07g060940.1 135 ELPLAIVRRVVKEKLSEcspdyDVSIHKEALLAFSESARIFIHYLSSTANDFCKDARRQTMKADDVFKALDEMDFSEFLEPLKASLEDFKKK 226
                     69**********999752222356899***********************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.4E-81059IPR009072Histone-fold
SuperFamilySSF471135.35E-51158IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.7E-24135224IPR009072Histone-fold
PfamPF008081.0E-7135204IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.48E-18137226IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MESEKVVVDE LPLAIVRRVV KEKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSSTTQQ  60
RLPELRLLEE SAPISIRRFK APHNIRMRFR RKHPGPGGGG GGELLSWLIR VTGAGKTASE  120
RGRVKMESEK VVVDELPLAI VRRVVKEKLS ECSPDYDVSI HKEALLAFSE SARIFIHYLS  180
STANDFCKDA RRQTMKADDV FKALDEMDFS EFLEPLKASL EDFKKKNAGK RAGGGAADSK  240
PAGGAATKPT ETKKRKQEGP STQKNARKSK RDDGGNKIDE ENENDNTEEE NGNDEENEND  300
DENTEENGND EESEKEDEDE ENEKEDEGNS MEDNGNENDE SGDEDNSMEE IGSENGEDND  360
HNNSSNSSGE EVEGDDEDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g060940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040831e-139BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417885.11e-113PREDICTED: DNA polymerase epsilon subunit 3-like isoform X1
RefseqXP_010417886.11e-113PREDICTED: DNA polymerase epsilon subunit 3-like isoform X2
TrEMBLA0A1J3D4Q65e-83A0A1J3D4Q6_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
TrEMBLA0A1J3IA234e-83A0A1J3IA23_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
STRINGXP_010417886.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-73nuclear factor Y, subunit B11