PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g060840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 435aa    MW: 48972.9 Da    PI: 7.2719
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g060840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.6e-092502871954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp   ++  LAk++gLt++qV++WF N R +
  Csa07g060840.1 250 FEHflHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVR 287
                     665559******************************87 PP
2BELL106.81.4e-34131201272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rqel++k+akL+s++e+V++rY+qy++q+qt+iss e++aglgsa+pYt++Al++iS++Fr ++d+i+ qi
  Csa07g060840.1 131 RQELEMKRAKLISMVEKVEQRYRQYHDQMQTIISSSEQAAGLGSANPYTHMALQTISKKFRVVRDMICLQI 201
                     79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-5068199IPR006563POX domain
PfamPF075262.2E-3479197IPR006563POX domain
PROSITE profilePS5007112.131228291IPR001356Homeobox domain
SMARTSM003891.6E-8231295IPR001356Homeobox domain
CDDcd000863.39E-12231292No hitNo description
SuperFamilySSF466892.82E-17232297IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-27234295IPR009057Homeodomain-like
PfamPF059202.9E-17248287IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MASFFHGESN MREPSSDIFM MNLNPFPEPT ITSNAHNHHF DNLCFGSQQH GPRDEVEDHI  60
SSVSTYSYEG VFRGLTPIYL RAAQELLNEI VNVGNGSHGA KQEPRMSKES AIYGKGDIVG  120
GGHTPGVAAY RQELEMKRAK LISMVEKVEQ RYRQYHDQMQ TIISSSEQAA GLGSANPYTH  180
MALQTISKKF RVVRDMICLQ IKHVNKLLGK KECDEQLKHL GKMAHHHSNA WRPQRVLPEN  240
AVSILRSWLF EHFLHPYPRD LDKVMLAKQT GLTKSQVSNW FINARVRVWK PMVEELYLEE  300
MNIEESRKGS NPNEHSTNGS SSKQPYNNST SDESSNSILP TFYQGFNENE TPMPNASSSC  360
SIGRFSKQHL NQANFIHFNG GFEIYHTMVG NGVSLSLGLP HSCDQTFKNI QFGSTSHGTE  420
ISGIYPSSTY QIMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16236295463Homeobox protein Meis2
3k2a_B2e-16236295463Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g060840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417873.10.0PREDICTED: BEL1-like homeodomain protein 5
RefseqXP_010417874.10.0PREDICTED: BEL1-like homeodomain protein 5
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLR0FW020.0R0FW02_9BRAS; Uncharacterized protein
STRINGXP_010417873.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5