PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g059260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 246aa    MW: 27164.9 Da    PI: 10.3305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g059260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20105154255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     g+ GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa++kl+g
  Csa07g059260.1 105 GFMGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARKLRG 154
                     789******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-14105154IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21105162IPR016177DNA-binding domain
SMARTSM003801.7E-30105170IPR001471AP2/ERF domain
PROSITE profilePS5103221.417105162IPR001471AP2/ERF domain
CDDcd000183.47E-16106161No hitNo description
PRINTSPR003673.0E-9106117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-28106161IPR001471AP2/ERF domain
PRINTSPR003673.0E-9128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MENTVDLCSI LETRQSFFGT ETLFSDHVIM AAKEPLNGAT SFDISSLFSS NPRPELENSR  60
RIMDDSIAAV VGENVLFGDN NKVPATEVQG GGVKPWRKVP QKNGGFMGVR KRPWGRWSAE  120
IRDRIGRCRH WLGTFDTAEE AARAYDAAAR KLRGTKAKTN FVIPPLFPEE IAAQAQSSTT  180
EENRRRKKKK RVNARKCVKV TSVAQLFGDA NIISSSTSRP NVTSSFNNLD KMGLELDLKL  240
SLGLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1789161371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189NRRRKKKK
2184190RRKKKKR
3185190RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g059260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417688.10.0PREDICTED: ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M52e-78ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLR0I8Z91e-100R0I8Z9_9BRAS; Uncharacterized protein
STRINGXP_010417688.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-73ERF family protein