PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g057280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 142aa    MW: 16545.3 Da    PI: 9.699
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g057280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.42.8e-16953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    krie    r+  +skR++gilKKAeEL  LC++++ +i++s+t k
  Csa07g057280.1  9 KRIECPKERSSKYSKRKKGILKKAEELALLCNIDIIMILISPTEK 53
                    78999999**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.969161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-20279IPR002100Transcription factor, MADS-box
CDDcd001205.18E-18260No hitNo description
PRINTSPR004042.2E-12323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-151056IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRKKLELKR IECPKERSSK YSKRKKGILK KAEELALLCN IDIIMILISP TEKPTLFHTP  60
SRFLSQNLKE FLGTSIQERE ERRAYTTKML KKVLVENNDE EVPIVIDYLS PDRGEVIQDD  120
KKVTELRETR RLLDEKTSIL E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g057280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417420.11e-96PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLA0A0D3DVC84e-41A0A0D3DVC8_BRAOL; Uncharacterized protein
STRINGXP_010417420.15e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.12e-23AGAMOUS-like 33