PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g054870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 350aa    MW: 38667.5 Da    PI: 8.0936
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g054870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.14.2e-095495439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r C+ +++  ++lfC  +  +lC +C  ++H        H++
  Csa07g054870.1 54 RLCDSCKSTAATLFCLADAAFLCGQCDGKIHTAnklasrHER 95
                    78******99*********************55666667765 PP

2zf-B_box25.62.6e-0896141342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      + C+ +e+ +++  C+ +   lC  C   +H+       H++vp+
  Csa07g054870.1  96 VWLCEVCEQAPAHVTCKADAAALCIACDRDIHSAnplsrrHERVPI 141
                     689*****************************66899999*99997 PP

3CCT67.53.5e-23283326144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKr++RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Csa07g054870.1 283 REARVLRYREKRRNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 326
                     9*****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-145198IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2675198IPR000315B-box-type zinc finger
CDDcd000216.03E-85498No hitNo description
PfamPF006435.1E-75495IPR000315B-box-type zinc finger
PROSITE profilePS5011910.87994141IPR000315B-box-type zinc finger
PfamPF006438.3E-796141IPR000315B-box-type zinc finger
CDDcd000211.07E-997141No hitNo description
SMARTSM003362.1E-999141IPR000315B-box-type zinc finger
PROSITE profilePS5101716.608283325IPR010402CCT domain
PfamPF062036.5E-17283325IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MTQRVPYNRH FHSTKSQLEK EKADSSSIIK IIKNSREERE RERERIKKSM ASSRLCDSCK  60
STAATLFCLA DAAFLCGQCD GKIHTANKLA SRHERVWLCE VCEQAPAHVT CKADAAALCI  120
ACDRDIHSAN PLSRRHERVP IVPFYDAVSG SAKSASSSVN FVDEDGGDAD VSVEAASWLL  180
PKEGGVEISN LLFSDLEYPK MEVTSENSSG NDGVVPVQNK TMFLSEDYFN FDLAPSKISQ  240
QGFDFINQTD SSRSLDVALV PENGGVTMTT VTTPVVQLSP AEREARVLRY REKRRNRKFE  300
KTIRYASRKA YAEMRPRIKG RFAKRTDSRG DDGGGDVGVY GGFGVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g054870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417237.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK531e-170COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A178VTY81e-167A0A178VTY8_ARATH; COL3
STRINGXP_010417237.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-156CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]