PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g054560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 362aa MW: 39736.4 Da PI: 10.3749 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 282 | 339 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +d +++++tYegeH+h+ Csa07g054560.1 282 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDSTMLIVTYEGEHRHN 339 9************************8766****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.1E-18 | 229 | 278 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-32 | 268 | 340 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.976 | 275 | 341 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-26 | 278 | 340 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 280 | 340 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 282 | 338 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
PITLSFSFFH SSKQKQKKTS HFVLSDLQYC LIMTVDIMRI PKMEDQTAIQ EAASQGLQSM 60 EHLIRVLSNR PEERNVDCSE ITDFTVSKFK KVISLLNRTG HARFRRGPVH SPPLPPSSSS 120 ASLPPPPAKI TPLAPVPIQI SAPVSFVQSN QQSVTLDFTR PSVFGAKTKS SEVVEFAKES 180 FRVSSNNSSF MSSAITGDGS VSKGSSIFLA PAAPLPSSAK QPLAGLPYRK RCFEHDHSED 240 FSGKISGSGN GKCHCKKSRK NRMKRTVRVP AISAKIADIP PDEYSWRKYG QKPIKGSPHP 300 RGYYKCSTFR GCPARKHVER ALDDSTMLIV TYEGEHRHNQ SAMHENMMAS PSVSGLVFGS 360 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 268 | 339 | 2 | 72 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00278 | DAP | Transfer from AT2G24570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g054560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF425836 | 0.0 | AF425836.1 Arabidopsis thaliana WRKY transcription factor 17 (WRKY17) mRNA, complete cds. | |||
GenBank | AK227604 | 0.0 | AK227604.1 Arabidopsis thaliana mRNA for WRKY transcription factor 17, complete cds, clone: RAFL14-20-C13. | |||
GenBank | BT006424 | 0.0 | BT006424.1 Arabidopsis thaliana At2g24570 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417213.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SJA8 | 0.0 | WRK17_ARATH; Probable WRKY transcription factor 17 | ||||
TrEMBL | R0HAG8 | 0.0 | R0HAG8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010417213.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24570.1 | 1e-173 | WRKY DNA-binding protein 17 |
Publications ? help Back to Top | |||
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