PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g053750.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TALE

Protein Properties

Length: 646aa MW: 71007.7 Da PI: 6.8333

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g053750.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	460	497	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + Csa07g053750.1 460 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 497 665569******************************88 PP
2	BELL	123.6	7.7e-40	318	389	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Csa07g053750.1 318 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 389 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.9E-85	245	387	IPR006563	POX domain
Pfam	PF07526	5.8E-52	251	386	IPR006563	POX domain
PROSITE profile	PS50071	12.86	438	501	IPR001356	Homeobox domain
SMART	SM00389	1.1E-9	441	505	IPR001356	Homeobox domain
CDD	cd00086	3.49E-13	441	502	No hit	No description
SuperFamily	SSF46689	1.28E-17	442	508	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	444	507	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	458	497	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MGLATTTFHH QNSDSTMSQD YHHHQGIFSF SNGFHRSSST THHEEEVDES AVSGAQIPVY 60 ETAGMLSEMF AFPGGGGGGG GSGGEILDQS STKQLLEQQN RQNSNNNSTL HMLLPNHHQG 120 FAFTDENTMH QQQQQQHSTW PSSSDHHQNR DMIGTVHVEG GKGLSLSLSS SLAAAKAEEY 180 RSIYCAAVDG TSSSTNASAH HHQFNQFKNL LLDNSSSSSH HHHQHQAVGH FGSSSSSPMA 240 ASSSIGGIYT LRNSKYTKPA QELLEEFCSV GRGHFKKNKL SRNNSNPNTT GGGGGGGGGG 300 SSSSAGTAND NPPLSPADRI EHQRRKVKLL SMLEEVDRRY NHYCEQMQMV VNSFDQVMGY 360 GAAVPYTTLA QKAMSRHFRC LKDAVAVQLK RSCELLGDKE AAGAASSGLT KGETPRLRLL 420 EQSLRQQRAF HHMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLNPYPSD ADKHLLARQT 480 GLSRNQVSNW FINARVRLWK PMVEEMYQQE AKEREEEAEE NENQQQRRQQ ETNNNDTKPN 540 NNENNFTVIT AQTPTTMTST HHDSDSSFLL PSVAAASHGR SDAFTVTTCQ QDVSDFHVDD 600 GGGGVNAIRF GTKQPGDVSL TLGLRHSGNI PDKNTSFSVR DFGDF*

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MGLATTTFHH QNSDSTMSQD YHHHQGIFSF SNGFHRSSST THHEEEVDES AVSGAQIPVY  60
ETAGMLSEMF AFPGGGGGGG GSGGEILDQS STKQLLEQQN RQNSNNNSTL HMLLPNHHQG  120
FAFTDENTMH QQQQQQHSTW PSSSDHHQNR DMIGTVHVEG GKGLSLSLSS SLAAAKAEEY  180
RSIYCAAVDG TSSSTNASAH HHQFNQFKNL LLDNSSSSSH HHHQHQAVGH FGSSSSSPMA  240
ASSSIGGIYT LRNSKYTKPA QELLEEFCSV GRGHFKKNKL SRNNSNPNTT GGGGGGGGGG  300
SSSSAGTAND NPPLSPADRI EHQRRKVKLL SMLEEVDRRY NHYCEQMQMV VNSFDQVMGY  360
GAAVPYTTLA QKAMSRHFRC LKDAVAVQLK RSCELLGDKE AAGAASSGLT KGETPRLRLL  420
EQSLRQQRAF HHMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLNPYPSD ADKHLLARQT  480
GLSRNQVSNW FINARVRLWK PMVEEMYQQE AKEREEEAEE NENQQQRRQQ ETNNNDTKPN  540
NNENNFTVIT AQTPTTMTST HHDSDSSFLL PSVAAASHGR SDAFTVTTCQ QDVSDFHVDD  600
GGGGVNAIRF GTKQPGDVSL TLGLRHSGNI PDKNTSFSVR DFGDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	5e-16	447	504	1	58	Homeobox protein Meis1
4xrs_B	5e-16	447	504	1	58	Homeobox protein Meis1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	300	TGGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g053750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF353092	0.0	AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBank	AY058179	0.0	AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBank	AY142019	0.0	AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417119.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	0.0	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	D7LG22	0.0	D7LG22_ARALL; Uncharacterized protein
STRING	XP_010417119.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	0.0	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]