PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g053330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 32816.5 Da PI: 5.9501 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll +v+++G+++W++I + ++ gR++k+c++rw + Csa07g053330.1 13 KGPWSPEEDDLLQTLVEKHGPRNWSLITKSVP-GRSGKSCRLRWCNQ 58 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.8e-17 | 68 | 109 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ Csa07g053330.1 68 FTAEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109 8******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.993 | 8 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-31 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-16 | 12 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-18 | 13 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-26 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-15 | 15 | 57 | No hit | No description |
SMART | SM00717 | 5.6E-14 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.342 | 65 | 114 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.41E-11 | 68 | 110 | No hit | No description |
Pfam | PF00249 | 1.6E-14 | 68 | 109 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MSGSTRKEMD RIKGPWSPEE DDLLQTLVEK HGPRNWSLIT KSVPGRSGKS CRLRWCNQLS 60 PEVEHRGFTA EEDDTIIRAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGQRGG 120 YDGSLTDEQP LKRTASGGGG VGVVLTALSP TGSDVSEQSS GSVLPSSHVF KPTARAGGVL 180 IEHSSSEEEE EKDPVTCLSL SLPWVKESTP VRRDTAELFP VKREEEEEEE EEKERGINGF 240 GGGFMTVLQE MIKTEVRSYM TDLHLGNGGG NGGGGGGGGG GASSCMVQGS NVGFREFIGI 300 GKIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-39 | 12 | 114 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-39 | 12 | 114 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-39 | 12 | 114 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g053330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002391 | 1e-123 | AC002391.3 Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete sequence. | |||
GenBank | AK117263 | 1e-123 | AK117263.1 Arabidopsis thaliana At2g23290 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL16-81-L23. | |||
GenBank | AY088007 | 1e-123 | AY088007.1 Arabidopsis thaliana clone 40307 mRNA, complete sequence. | |||
GenBank | AY519574 | 1e-123 | AY519574.1 Arabidopsis thaliana MYB transcription factor (At2g23290) mRNA, complete cds. | |||
GenBank | BT008343 | 1e-123 | BT008343.1 Arabidopsis thaliana At2g23280 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-123 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417080.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-126 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | D7LF96 | 1e-150 | D7LF96_ARALL; Uncharacterized protein | ||||
STRING | XP_010417080.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 1e-141 | myb domain protein 70 |
Publications ? help Back to Top | |||
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