PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g052940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 230aa MW: 26255.6 Da PI: 7.1165 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.1 | 1.2e-10 | 129 | 174 | 3 | 48 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 e+++ +r+++NRe+A+rsR RK+ ie+L++++ L eN++L ++ Csa07g052940.1 129 EDRKRKRMESNRESAKRSRMRKQRHIENLKDEANRLGLENRELGNR 174 78999***********************************999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.8E-13 | 127 | 191 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.6E-10 | 128 | 175 | No hit | No description |
PROSITE profile | PS50217 | 9.99 | 129 | 175 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.9E-9 | 129 | 175 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.85E-10 | 131 | 178 | No hit | No description |
CDD | cd14702 | 5.18E-16 | 132 | 179 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 134 | 149 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMSTLPAFSF TEPGLVNQIS DFQTGFTPWE LDCCADLFLS TIHQEPAVPS PCTGESETGS 60 VKINTGFNGF DESCIGSIKT NSGSDDSDIF HGVPSPQSDE LNSDNTRTRI NATDHNRMKL 120 NRPVLQVSED RKRKRMESNR ESAKRSRMRK QRHIENLKDE ANRLGLENRE LGNRLRIVLY 180 NIGLISTDND RLMSEQEILR RRFLEMRQIL ILRQLQQNPS LIINHHQMI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 148 | KRSRMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g052940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417044.1 | 1e-169 | PREDICTED: basic leucine zipper 43-like | ||||
TrEMBL | D7LE49 | 1e-145 | D7LE49_ARALL; BZIP transcription factor family protein | ||||
STRING | XP_010417044.1 | 1e-169 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22850.2 | 1e-135 | basic leucine-zipper 6 |