PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g046920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 292aa    MW: 33171.8 Da    PI: 6.5151
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g046920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.3e-102222601854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     lF+   ++yp+++e+  LA+++gL+++qV++WF N R +
  Csa07g046920.1 222 LFQHflHPYPNEAEKLVLASQTGLSKNQVSNWFINARVR 260
                     5775569******************************98 PP
2BELL100.51.3e-3283154172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++e+++k++kLlsll++V++r+  y++ql++vi++Fe++ag gs+k+Yt lAl+a++rhF +L++ai++q+
  Csa07g046920.1  83 ENHEIHIKITKLLSLLQQVEERFDMYCNQLEQVIAAFEEIAGEGSSKVYTGLALQAMTRHFGSLEEAIISQL 154
                     689******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-1213152IPR006563POX domain
PfamPF075269.2E-2919150IPR006563POX domain
SMARTSM003899.7E-10204268IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27209270IPR009057Homeodomain-like
CDDcd000867.80E-11210265No hitNo description
SuperFamilySSF466894.28E-18210273IPR009057Homeodomain-like
PfamPF059201.9E-17221260IPR008422Homeobox KN domain
PROSITE profilePS5007111.791223264IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEEFRVRVRH ECSSLRGTLL DSRYAKAVQC LVEEVIDIGG RDVELCNDIL IQQLFPGRKR  60
SGFKLSSEIK SELCSSGFMS LPENHEIHIK ITKLLSLLQQ VEERFDMYCN QLEQVIAAFE  120
EIAGEGSSKV YTGLALQAMT RHFGSLEEAI ISQLNSVRRR FINSHQDVPK IISSGLSQLS  180
LFDGNTSSSL RRLGLVQGPQ RHAWKPIRGL PETSVAILRA WLFQHFLHPY PNEAEKLVLA  240
SQTGLSKNQV SNWFINARVR LWKPMIEEMY REEFGDSSDE SMQREANDDS N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-18210271566Homeobox protein Meis2
3k2a_B8e-18210271566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g046920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464320.0DQ446432.1 Arabidopsis thaliana clone pENTR221-At1g75430 homeodomain-containing protein (At1g75430) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416425.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD10.0BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLR0I7660.0R0I766_9BRAS; Uncharacterized protein
STRINGXP_010416425.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.10.0BEL1-like homeodomain 11