PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g045890.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 312aa MW: 35405.9 Da PI: 7.5593

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g045890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.9	1.3e-25	144	194	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl Csa07g045890.1 144 SKALSMETVSRYFYMPITQAAIELNVGLTLLKRRCRELGIRRWPHRKLMSL 194 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	115	216	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-20	147	194	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MADHKTKEDK PFSFLTHSPS FDQSSLSYPL FDWEDDLLAL HESSASQSFP LTTTSLPLPD 60 LEPLSEEVSW VLLCSVDLLN SYSSGSWNET EHNRGYGGAS SEHKTKHRAV QETTKKRKLN 120 ERRRENSVRI ISDNTTTYTT CPASKALSME TVSRYFYMPI TQAAIELNVG LTLLKRRCRE 180 LGIRRWPHRK LMSLKTLISN VKELQKMEGE ENAGKLQNAL KMLEKEKRTI EELPDLEFEE 240 KTKRLRQACF KANHKRKKKR SLKSDQAHIA SCSSSGSVAS DESVNDAVME ESDEEVKYLL 300 CGFSNEFSSG L*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g045890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019093346.1	0.0	PREDICTED: protein RKD2-like
Swissprot	Q9CA66	1e-156	RKD2_ARATH; Protein RKD2
TrEMBL	R0GEJ6	1e-168	R0GEJ6_9BRAS; Uncharacterized protein
STRING	XP_010416304.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-128	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]