PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g045840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 366aa MW: 41897.1 Da PI: 6.5062 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.9 | 4.6e-22 | 9 | 50 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 krie++snrq t+skRr gilKKA ELSvLCd+++ +++fs+ Csa07g045840.1 9 KRIESSSNRQNTYSKRRSGILKKARELSVLCDIDIVLLMFSH 50 79**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.478 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-24 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-19 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-18 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MGRVKLMIKR IESSSNRQNT YSKRRSGILK KARELSVLCD IDIVLLMFSH LPEGLPHYMD 60 IMYWRCHFQV CAVDSSRKDK TALKKTFMKL DHDGNIKEFF VGSRNQTNVG LTNQVAFFQA 120 QVLECHRRLS RWTDIVRTEN IEHLEHFGES LRNSIERVQI HKGHFRKNQL LLLECTTTQF 180 HSGISSPLVI NGIQENHLIS WLPDNSYQQM IIPADSSFLP HHEMENTATA SLPVYSSFFE 240 SRIQEDQNCN LEQQLDRLRE EGNMLNELNG NSCSSLQLGE EYSYLTQFGM QEEKKLESGF 300 EFNFQQDLSM YPVSNSFQFP DQPVFAATDH HQTCSNPVFG HSDNNQVAET GTGTGIGYGN 360 GDGKR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g045840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF705604 | 1e-147 | KF705604.1 Boechera sp. IPK Bsp 9 isolate BAC5_7 APOLLO gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428431.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X2 | ||||
Swissprot | Q7X9I0 | 1e-104 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A3P5YL32 | 1e-102 | A0A3P5YL32_BRACM; Uncharacterized protein | ||||
STRING | XP_010428430.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5933 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-103 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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