PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g043060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 402aa    MW: 44996.3 Da    PI: 4.6236
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g043060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-072264640
        zf-B_box  6 CpeHeeke..lqlfCedCqqllCedClleeHkg......Htvv 40
                    C+ + +    ++++C  ++ +lC++C  ++H+       H++v
  Csa07g043060.1 22 CDVCMKRSsrASWYCPADDAFLCQSCDASIHSAnnlakrHERV 64
                    8888853334*********************657788888876 PP
2CCT69.21.1e-23351394144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Csa07g043060.1 351 REARMLRYREKRRTRLFAKKIRYEVRKLNAEQRPRIKGRFVKRT 394
                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.0E-111766IPR000315B-box-type zinc finger
PROSITE profilePS501199.3141766IPR000315B-box-type zinc finger
CDDcd000211.61E-92266No hitNo description
PfamPF006436.0E-62364IPR000315B-box-type zinc finger
PfamPF062031.5E-17351393IPR010402CCT domain
PROSITE profilePS5101716.112351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVVEVESRAA GVTGGKTAAR GCDVCMKRSS RASWYCPADD AFLCQSCDAS IHSANNLAKR  60
HERVRLQSSS SPELLMKTKA TDKTTSVWYE GFRRKARTPR SKLLQIQHVN NSNDPLVPEL  120
GVEEEGVFSF SSTDENEESL NCCVPVFDPF SDMVIDDNSF GLVPDGVDIT TSSGDLGEIE  180
KAIMDDDEGL IGFLPFDMDL GEIVMDVESL LEEEQPFLRV KELNSSSGLV KEETNVGFEF  240
DSKDLKRVKD EEEEEVKCEH GGSDQETCED EDRKTTLFLR LDYEAVISAW DNHGSPWETG  300
IKPEFNLDGC LLGGNNTCPS HVMGGFEELA SAVGSVTRQQ GRDRGGSDVE REARMLRYRE  360
KRRTRLFAKK IRYEVRKLNA EQRPRIKGRF VKRTSLNFDV L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361377RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g043060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416209.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 7-like
SwissprotQ9C9A90.0COL7_ARATH; Zinc finger protein CONSTANS-LIKE 7
TrEMBLR0IES10.0R0IES1_9BRAS; Uncharacterized protein
STRINGXP_010416209.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1750679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]