PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g043020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 29837.1 Da PI: 7.4417 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 3e-09 | 161 | 208 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR +iN+++ L++++P + k + a++L + ++Y++sLq Csa07g043020.1 161 SHSIAERARRGKINERLKCLQDIVPGC----YKTMGMATMLDEIINYVQSLQ 208 8*************************9....356999**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-16 | 155 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.69E-10 | 155 | 212 | No hit | No description |
PROSITE profile | PS50888 | 15.32 | 157 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 157 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-7 | 161 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-8 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MANLSSDFQT YTMDDPITQL AELSNTLHHF QTFPPFSSPL DSLFFHHQIS NHFPGKTPEN 60 DFNHHHQGIF LPSNAHNNEE SSSKVDTKKR KTFMEAVSTS ENSVSDQTLS SSSAAQVSLN 120 GKLLTKNSSS SKRGKRSKNR EEEKEREVVH VRARRGQATD SHSIAERARR GKINERLKCL 180 QDIVPGCYKT MGMATMLDEI INYVQSLQNQ VEFLSMKITA ASSYYDFNSE TDAVESMQRA 240 KAREAVEMGQ GRDGNPVFHS SSWTL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g043020.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118781 | 0.0 | AK118781.1 Arabidopsis thaliana At1g73830 mRNA for putative bHLH transcription factor (bHLH050), complete cds, clone: RAFL21-11-M10. | |||
GenBank | BT006055 | 0.0 | BT006055.1 Arabidopsis thaliana clone U51368 putative helix-loop-helix DNA-binding protein (At1g73830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416202.1 | 0.0 | PREDICTED: transcription factor BEE 3-like | ||||
Swissprot | Q8GWK7 | 1e-157 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | D7KRM9 | 1e-162 | D7KRM9_ARALL; Uncharacterized protein | ||||
STRING | XP_010416202.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2997 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73830.1 | 1e-150 | BR enhanced expression 3 |
Publications ? help Back to Top | |||
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