PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g039450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 260aa    MW: 28808.8 Da    PI: 4.6013
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g039450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-2069120156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+y+G+r+++ +grW+AeIrdps+     r++lg+f tae+Aa+a++  +k+++g+
  Csa07g039450.1  69 SRYRGIRRRP-WGRWAAEIRDPSK---GVRVWLGTFNTAEDAARAYDLEAKRIRGA 120
                     79********.**********965...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-2269128IPR016177DNA-binding domain
CDDcd000181.95E-3269128No hitNo description
PfamPF008478.3E-1369119IPR001471AP2/ERF domain
PROSITE profilePS5103224.23670127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3170128IPR001471AP2/ERF domain
SMARTSM003802.0E-3770133IPR001471AP2/ERF domain
PRINTSPR003672.9E-117182IPR001471AP2/ERF domain
PRINTSPR003672.9E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MCGGAVISDY ITPSESDQEK IGRGKKSSWT SKAVFDCSIN DFNGDFEEFE SDFSSTRKRA  60
SSGSALQSSR YRGIRRRPWG RWAAEIRDPS KGVRVWLGTF NTAEDAARAY DLEAKRIRGA  120
KAKLNFPNEP SKKRKAEAKT VQLIQEKKKH ETDLGLAVAS SLPSSSDVDF LWDENNADTL  180
LIDTQWLQDV IMGDAKKKQE LNDGEEGNAN AALLSEELLA FENQTECFSQ IPFGEEGNCD  240
SLLSLSSLFD GDNNIDLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2271127360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A9e-2263129774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g039450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415981.10.0PREDICTED: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T51e-96ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLR0I0A11e-138R0I0A1_9BRAS; Uncharacterized protein
STRINGXP_010415981.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.24e-91ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]