PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g039230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 494aa    MW: 56341.7 Da    PI: 5.3083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g039230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10123158139
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKls 39 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++l+
  Csa07g039230.1 123 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRLT 158
                     79***************************8...777765 PP
2HLH35.41.9e-11281346155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC..............TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkas...........kapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P+++            +   K + a+i+  A+ Y+k+L+
  Csa07g039230.1 281 QRMTHIAVERNRRKQMNEYLAVLRSLMPPSYaqrqflwakltYGWWLKGDQASIVGGAISYLKELE 346
                     79***************************8779****9998877778999999********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-9121160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.16E-8121174No hitNo description
PROSITE profilePS5088811.179122177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-8122155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7123157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6128167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-12279350No hitNo description
SuperFamilySSF474594.19E-13279359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-13280350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.713280345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-9281346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-6286351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.734417493IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISCKD FPFHDLYFQE EEDLDPQDTK NNIKLGQGQE HGFASNNYNG  60
KSGDNSDDYN YNEEDLQWPR DDLPYGSTVD TKNQPPPLDV AVGGRRKRRR TRSCKNKEEI  120
ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PSYAQRLTMA LEAVVYPQDP FSYISCKDFP  180
FHDLYFQEEE DLDPQDTKNN IKLGQGQEHG FAGNNYNGKS GDNSDDYNYN EEDLQWPRDD  240
LPYGSTVDTK NQPPPLDVAV GGRRKRRRTR SCKNKEEIEN QRMTHIAVER NRRKQMNEYL  300
AVLRSLMPPS YAQRQFLWAK LTYGWWLKGD QASIVGGAIS YLKELEHHLQ SIEPPVKTAA  360
EDNETGRDQT KTIAPTSSSG PFSDFFAFPQ YSSQPTSAAA AEGMAEIEVT MVESHASLKI  420
LAKKRPKQLL KLVASIQSLR LTLLHLNVTT RDDSVLYSIS VKVEEGSQLN TVEDIAAAVN  480
QILRRIEEES SFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263267RKRRR
2263268RKRRRT
3281292RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g039230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4597710.0AJ459771.1 Arabidopsis thaliana mRNA for basic-helix-loop-helix transcription factor (bHLH096 gene).
GenBankBT0038710.0BT003871.1 Arabidopsis thaliana clone RAFL15-42-L08 (R20946) putative bHLH protein (At1g72210) mRNA, complete cds.
GenBankBT0060860.0BT006086.1 Arabidopsis thaliana clone U20946 putative bHLH protein (At1g72210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415951.10.0PREDICTED: transcription factor bHLH96-like isoform X1
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC40.0R0IFC4_9BRAS; Uncharacterized protein
STRINGXP_010415952.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]