PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g037100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 81aa MW: 9283.39 Da PI: 10.4676 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.9 | 2.3e-10 | 2 | 39 | 37 | 75 |
EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT-- CS B3 37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk 75 ++++ +grsWev + +k+++ ++ ++GW++Fvk+n L Csa07g037100.1 2 KIRTHWGRSWEVAI--SKNPRFyFMEKSGWEKFVKDNALG 39 78899*********..******555569*********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 2.1E-8 | 1 | 39 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.713 | 1 | 62 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-7 | 2 | 40 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-7 | 2 | 39 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MKIRTHWGRS WEVAISKNPR FYFMEKSGWE KFVKDNALGH SRIKTEQRRG SAYNDVKKEE 60 VVSPELSNRG PTREAESNGG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g037100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010467314.1 | 2e-39 | PREDICTED: B3 domain-containing protein At2g16210-like | ||||
Swissprot | Q5BPT7 | 5e-22 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | R0G9A5 | 3e-35 | R0G9A5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010489167.1 | 4e-37 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.2 | 3e-25 | B3 family protein |
Publications ? help Back to Top | |||
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