PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g036390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 324aa    MW: 36600.9 Da    PI: 7.6257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g036390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.31.9e-2937854128
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ +gl+k+Lv+y+g+a kg ktdW+mhe+rl
  Csa07g036390.1   3 GEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSdGSKCIGLRKSLVYYSGKAAKGIKTDWMMHEFRL 78 
                     689**************************************966677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.7991106IPR003441NAC domain
SuperFamilySSF1019413.66E-332106IPR003441NAC domain
PfamPF023654.6E-12778IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTGEKEWYFY CPRDRKYRNS TRPNRVTGAG FWKATGTDRP IYSSDGSKCI GLRKSLVYYS  60
GKAAKGIKTD WMMHEFRLPY TSSHTLGDTH HVSSNDSWAI CRILKKINTT AFRAISHSFV  120
SSLPQDARTD IKPYEKPSNT SQISSDKILP NSFCFKFYNE DMNVAQPSSC FDHKEAANTS  180
TCKATSHISN LGFSSWDSPG PRVDQQYLRS LLLFPQETQP PQLPNFINNY MISSADSSFL  240
DEYTNLIGSN IDLTSVILAQ EQCPALVSLP QEHNHETRIE ENILSNTNHA LHHLPLSNVG  300
DQKHHYMLLE NYYSSLSASF SIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-32110667165NO APICAL MERISTEM PROTEIN
1ut4_B1e-32110667165NO APICAL MERISTEM PROTEIN
1ut7_A1e-32110667165NO APICAL MERISTEM PROTEIN
1ut7_B1e-32110667165NO APICAL MERISTEM PROTEIN
3swm_A1e-32110670168NAC domain-containing protein 19
3swm_B1e-32110670168NAC domain-containing protein 19
3swm_C1e-32110670168NAC domain-containing protein 19
3swm_D1e-32110670168NAC domain-containing protein 19
3swp_A1e-32110670168NAC domain-containing protein 19
3swp_B1e-32110670168NAC domain-containing protein 19
3swp_C1e-32110670168NAC domain-containing protein 19
3swp_D1e-32110670168NAC domain-containing protein 19
4dul_A1e-32110667165NAC domain-containing protein 19
4dul_B1e-32110667165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g036390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893531e-91AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082649.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH03e-99FEZ_ARATH; Protein FEZ
TrEMBLR0HW280.0R0HW28_9BRAS; Uncharacterized protein
STRINGXP_010419107.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]