PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g036390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 36600.9 Da PI: 7.6257 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.3 | 1.9e-29 | 3 | 78 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ +gl+k+Lv+y+g+a kg ktdW+mhe+rl Csa07g036390.1 3 GEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSdGSKCIGLRKSLVYYSGKAAKGIKTDWMMHEFRL 78 689**************************************966677***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.799 | 1 | 106 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-33 | 2 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-12 | 7 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MTGEKEWYFY CPRDRKYRNS TRPNRVTGAG FWKATGTDRP IYSSDGSKCI GLRKSLVYYS 60 GKAAKGIKTD WMMHEFRLPY TSSHTLGDTH HVSSNDSWAI CRILKKINTT AFRAISHSFV 120 SSLPQDARTD IKPYEKPSNT SQISSDKILP NSFCFKFYNE DMNVAQPSSC FDHKEAANTS 180 TCKATSHISN LGFSSWDSPG PRVDQQYLRS LLLFPQETQP PQLPNFINNY MISSADSSFL 240 DEYTNLIGSN IDLTSVILAQ EQCPALVSLP QEHNHETRIE ENILSNTNHA LHHLPLSNVG 300 DQKHHYMLLE NYYSSLSASF SIT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 1 | 106 | 67 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 1 | 106 | 67 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 1 | 106 | 67 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 1 | 106 | 67 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-32 | 1 | 106 | 70 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 1 | 106 | 70 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 1 | 106 | 70 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 1 | 106 | 70 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 1 | 106 | 70 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 1 | 106 | 70 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 1 | 106 | 70 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 1 | 106 | 70 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-32 | 1 | 106 | 67 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 1 | 106 | 67 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g036390.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 1e-91 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019082649.1 | 0.0 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 3e-99 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | R0HW28 | 0.0 | R0HW28_9BRAS; Uncharacterized protein | ||||
STRING | XP_010419107.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-101 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|