PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g036310.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 404aa MW: 44388.1 Da PI: 9.3382 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.9 | 1.9e-37 | 129 | 188 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s+ntkfCyynny+++qPryfC++C+ryWt+GG++r vPvG+grrknk + Csa07g036310.2 129 PDKLLPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRSVPVGSGRRKNKGW 188 78999****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-30 | 126 | 186 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.7E-31 | 131 | 186 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.22 | 133 | 187 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 135 | 171 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSKTRDTEIK LFGRTITSFL AVNHCDPSSV SPFHDVSSDQ SKEGSSSSSS SSCSPTIGPN 60 KVLADKNEKE NNRFKDPYIL SDLNKPLKAV SEISSSPISS KTNCDQQSEI TTTTTSTTSG 120 EKSTALKKPD KLLPCPRCES ANTKFCYYNN YNVNQPRYFC RNCQRYWTAG GSMRSVPVGS 180 GRRKNKGWPS SNHYLQVTSE DCDNNHSGTI LSFGSSESSV TETGKHQSGD TAKKSADHSV 240 SQENQNYQGL FLPPQVMSPN NTSPWPYQWS PTGPNANFYP IPFYWGCTVP ICPTSETSPC 300 LGKRSRDHQT EGGINNTTTT STTRARLVSE SLRINGQATK SAVWSKLPTK PEKKTQGFSL 360 FNGFDTKGNS NRRSLVVPQT SYSLQANPAA MSRVMNFRES MQQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g036310.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK176346 | 0.0 | AK176346.1 Arabidopsis thaliana mRNA for putative H-protein promoter binding factor-2b, complete cds, clone: RAFL24-04-C08. | |||
GenBank | BT025623 | 0.0 | BT025623.1 Arabidopsis thaliana At1g69570 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010415608.1 | 0.0 | PREDICTED: cyclic dof factor 5-like | ||||
Swissprot | Q9SEZ3 | 0.0 | CDF5_ARATH; Cyclic dof factor 5 | ||||
TrEMBL | R0IAS5 | 0.0 | R0IAS5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010415608.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 0.0 | Dof family protein |
Publications ? help Back to Top | |||
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