PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g036310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 457aa MW: 49872.1 Da PI: 9.1419

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g036310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.7	2.3e-37	182	241	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s+ntkfCyynny+++qPryfC++C+ryWt+GG++r vPvG+grrknk + Csa07g036310.1 182 PDKLLPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRSVPVGSGRRKNKGW 241 78999****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	179	239	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-31	184	239	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.22	186	240	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	188	224	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MSKTRDTEIK LFGRTITSFL AVNHCDPSSV SPFHDVSSDQ SKEGSSSSSS SSCSPTIGPN 60 KIKLFGRTIT SFLAVNHCDP SSVSPFHDVS SDQSKEGSSS SSSSSCSPTI GPNKVLADKN 120 EKENNRFKDP YILSDLNKPL KAVSEISSSP ISSKTNCDQQ SEITTTTTST TSGEKSTALK 180 KPDKLLPCPR CESANTKFCY YNNYNVNQPR YFCRNCQRYW TAGGSMRSVP VGSGRRKNKG 240 WPSSNHYLQV TSEDCDNNHS GTILSFGSSE SSVTETGKHQ SGDTAKKSAD HSVSQENQNY 300 QGLFLPPQVM SPNNTSPWPY QWSPTGPNAN FYPIPFYWGC TVPICPTSET SPCLGKRSRD 360 HQTEGGINNT TTTSTTRARL VSESLRINGQ ATKSAVWSKL PTKPEKKTQG FSLFNGFDTK 420 GNSNRRSLVV PQTSYSLQAN PAAMSRVMNF RESMQQ*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MSKTRDTEIK LFGRTITSFL AVNHCDPSSV SPFHDVSSDQ SKEGSSSSSS SSCSPTIGPN  60
KIKLFGRTIT SFLAVNHCDP SSVSPFHDVS SDQSKEGSSS SSSSSCSPTI GPNKVLADKN  120
EKENNRFKDP YILSDLNKPL KAVSEISSSP ISSKTNCDQQ SEITTTTTST TSGEKSTALK  180
KPDKLLPCPR CESANTKFCY YNNYNVNQPR YFCRNCQRYW TAGGSMRSVP VGSGRRKNKG  240
WPSSNHYLQV TSEDCDNNHS GTILSFGSSE SSVTETGKHQ SGDTAKKSAD HSVSQENQNY  300
QGLFLPPQVM SPNNTSPWPY QWSPTGPNAN FYPIPFYWGC TVPICPTSET SPCLGKRSRD  360
HQTEGGINNT TTTSTTRARL VSESLRINGQ ATKSAVWSKL PTKPEKKTQG FSLFNGFDTK  420
GNSNRRSLVV PQTSYSLQAN PAAMSRVMNF RESMQQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g036310.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176346	0.0	AK176346.1 Arabidopsis thaliana mRNA for putative H-protein promoter binding factor-2b, complete cds, clone: RAFL24-04-C08.
GenBank	BT025623	0.0	BT025623.1 Arabidopsis thaliana At1g69570 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010415608.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	0.0	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	R0IAS5	0.0	R0IAS5_9BRAS; Uncharacterized protein
STRING	XP_010415608.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	0.0	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]