PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g036300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 141aa MW: 16220.8 Da PI: 7.253 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.2e-16 | 72 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ G+ +W++Ia++++ gR++k+c++rw++ Csa07g036300.1 72 RGHWRPAEDAKLKELVAVCGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 117 899*****************************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.406 | 67 | 122 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.23E-18 | 68 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-13 | 71 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 72 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 73 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.58E-12 | 75 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MSEDHHRLMD QISSSDHFSL NINNDQHLHR YPTSHREEEI RNSYLSDYSN CSKKDTADYG 60 SSGHSSKASV SRGHWRPAED AKLKELVAVC GPQNWNLIAE KLQGRSGKSC RLRWFNQLDP 120 RINRRAFTEE EEEKLYIASS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-14 | 72 | 138 | 4 | 70 | C-Myb DNA-Binding Domain |
1msf_C | 5e-14 | 72 | 138 | 4 | 70 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g036300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF249308 | 1e-131 | AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300946.2 | 2e-76 | LOW QUALITY PROTEIN: transcription factor MYB105 | ||||
Swissprot | Q9SEZ4 | 2e-73 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | D7KXG8 | 1e-75 | D7KXG8_ARALL; MYB105 | ||||
TrEMBL | R0HVG4 | 9e-76 | R0HVG4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010419102.1 | 4e-96 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 5e-65 | myb domain protein 105 |
Publications ? help Back to Top | |||
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