PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g034570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 365aa MW: 40439.9 Da PI: 5.8891 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 5.1e-14 | 173 | 219 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L Csa07g034570.1 173 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 219 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.85 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-11 | 173 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 174 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-14 | 174 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.15E-5 | 183 | 222 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.1E-4 | 259 | 314 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MCAKKEEEEE DSSRAMNNIQ NYQNDLFFHQ LISHHHHHHD PSQSETFGAS GNVGSGFTIF 60 SQDSVSPIWS LPPPTSIQPP FDQFPPPSST PAPFYGSFFN RNQVHHGQGL QFGYEGFGGA 120 TSETHHHHEQ LRILSEALGP VVQAGSGPFG LQAELGKMTA QEIMDAKALA ASKSHSEAER 180 RRRERINNHL AKLRSILPNT TKTDKASLLA EVIQHVKELK RETSVISETN LVPTESDELT 240 VAFTEEEETG DGRFVIKASL CCEDRSDLLP DMIKTLKAMR LKTLQAEITT VGGRVKNVLF 300 VTGEESSGEE VEEQYCIGTI EEALKALMEK SNVEESSSSG NAKRQRMSSH NTITIVEQQQ 360 HHQR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 183 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g034570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY072161 | 0.0 | AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. | |||
GenBank | AY122983 | 0.0 | AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010415517.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 0.0 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | V4JST7 | 0.0 | V4JST7_EUTSA; Uncharacterized protein | ||||
STRING | XP_010415517.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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